miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10934 5' -54.3 NC_002794.1 + 2057 0.73 0.738854
Target:  5'- -cGCCGGcGCCcgcucgucuGGCgCCGACGCGUCg -3'
miRNA:   3'- gaUGGCCaUGGu--------UUG-GGCUGCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 2495 0.68 0.925237
Target:  5'- -aGCCGGUGCCAcgGGCCgCGcuccuCGcCGUCg -3'
miRNA:   3'- gaUGGCCAUGGU--UUGG-GCu----GC-GCAGa -5'
10934 5' -54.3 NC_002794.1 + 2874 0.66 0.970008
Target:  5'- -gGCgCGGUcGCCcucGCCCGGCGUGUg- -3'
miRNA:   3'- gaUG-GCCA-UGGuu-UGGGCUGCGCAga -5'
10934 5' -54.3 NC_002794.1 + 3433 0.69 0.919802
Target:  5'- -gACgGGU-CCGcGgCCGGCGCGUCg -3'
miRNA:   3'- gaUGgCCAuGGUuUgGGCUGCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 7565 0.74 0.689819
Target:  5'- -cGCCGcGcGCCGGACCCGGCcCGUCg -3'
miRNA:   3'- gaUGGC-CaUGGUUUGGGCUGcGCAGa -5'
10934 5' -54.3 NC_002794.1 + 7942 0.66 0.977799
Target:  5'- -cGCCGGgccccGCCGcgaCCGuCGCGUCa -3'
miRNA:   3'- gaUGGCCa----UGGUuugGGCuGCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 12194 0.79 0.427745
Target:  5'- -cGCCGGgcCCGAGCgCCGACGgGUCg -3'
miRNA:   3'- gaUGGCCauGGUUUG-GGCUGCgCAGa -5'
10934 5' -54.3 NC_002794.1 + 13823 0.67 0.960435
Target:  5'- -cGCCGGcgACCAGACCagguccuGCGCGUa- -3'
miRNA:   3'- gaUGGCCa-UGGUUUGGgc-----UGCGCAga -5'
10934 5' -54.3 NC_002794.1 + 19250 0.69 0.902113
Target:  5'- -gGCCGGcacgGCCAucCUCGugGCGUUc -3'
miRNA:   3'- gaUGGCCa---UGGUuuGGGCugCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 42188 0.71 0.837253
Target:  5'- -cGCCGGUugUgAGGCUCGACGCG-Cg -3'
miRNA:   3'- gaUGGCCAugG-UUUGGGCUGCGCaGa -5'
10934 5' -54.3 NC_002794.1 + 46203 0.66 0.97539
Target:  5'- -cGCCGaGgagGCCGAGCgggGGCGCGUCg -3'
miRNA:   3'- gaUGGC-Ca--UGGUUUGgg-CUGCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 46305 0.66 0.980029
Target:  5'- -aGCCGaGU-CCGAACCCGA-GCGg-- -3'
miRNA:   3'- gaUGGC-CAuGGUUUGGGCUgCGCaga -5'
10934 5' -54.3 NC_002794.1 + 50041 0.67 0.956822
Target:  5'- -cGCCGGcGgCGAGCCgaGCGCGUCg -3'
miRNA:   3'- gaUGGCCaUgGUUUGGgcUGCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 51805 0.7 0.860722
Target:  5'- -cGCCGucgACUucucGCCCGACGCGUCc -3'
miRNA:   3'- gaUGGCca-UGGuu--UGGGCUGCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 56925 0.71 0.837253
Target:  5'- uCUGCCGGUgcGCCcccaCCGugGCGUgCUg -3'
miRNA:   3'- -GAUGGCCA--UGGuuugGGCugCGCA-GA- -5'
10934 5' -54.3 NC_002794.1 + 57955 0.67 0.956822
Target:  5'- ---aCGGUACaCAGGucCCCGugGCGUUc -3'
miRNA:   3'- gaugGCCAUG-GUUU--GGGCugCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 58485 0.67 0.948936
Target:  5'- -aGCCGGg--CGAGCgCCGACGCGg-- -3'
miRNA:   3'- gaUGGCCaugGUUUG-GGCUGCGCaga -5'
10934 5' -54.3 NC_002794.1 + 62275 0.66 0.972795
Target:  5'- gUACCGGU-UCAAACgaGAaCGUGUCUg -3'
miRNA:   3'- gAUGGCCAuGGUUUGggCU-GCGCAGA- -5'
10934 5' -54.3 NC_002794.1 + 64062 0.67 0.968241
Target:  5'- aCUGCCGGgcgACCAcgugacuuGCCCuagaacacggucucGCGCGUCg -3'
miRNA:   3'- -GAUGGCCa--UGGUu-------UGGGc-------------UGCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 64575 0.69 0.919802
Target:  5'- -cGCCGGcGCCGucgcuccgccGCCCGugGuCGUCa -3'
miRNA:   3'- gaUGGCCaUGGUu---------UGGGCugC-GCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.