miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10934 5' -54.3 NC_002794.1 + 67437 0.66 0.97539
Target:  5'- -gACCGGgaugACCGgguGGCCCG-CGCG-Ca -3'
miRNA:   3'- gaUGGCCa---UGGU---UUGGGCuGCGCaGa -5'
10934 5' -54.3 NC_002794.1 + 67545 0.66 0.972795
Target:  5'- -gACCGuGgcgACCGAGCCCgcccgGACGCGg-- -3'
miRNA:   3'- gaUGGC-Ca--UGGUUUGGG-----CUGCGCaga -5'
10934 5' -54.3 NC_002794.1 + 69270 0.69 0.89576
Target:  5'- uUACCGGgacugagcGCCGAGgCCGGCGCcgacGUCg -3'
miRNA:   3'- gAUGGCCa-------UGGUUUgGGCUGCG----CAGa -5'
10934 5' -54.3 NC_002794.1 + 69724 0.66 0.97539
Target:  5'- -cGCCGGUuucugGCC-GGCCCucuggGACGCGgUCUa -3'
miRNA:   3'- gaUGGCCA-----UGGuUUGGG-----CUGCGC-AGA- -5'
10934 5' -54.3 NC_002794.1 + 73176 0.69 0.919802
Target:  5'- gUGCCGGUcgcGCCAGcGCCgGGCGaCGUUc -3'
miRNA:   3'- gAUGGCCA---UGGUU-UGGgCUGC-GCAGa -5'
10934 5' -54.3 NC_002794.1 + 74459 0.68 0.940148
Target:  5'- -gGCCGGcGCCgGGACCgCGAC-CGUCg -3'
miRNA:   3'- gaUGGCCaUGG-UUUGG-GCUGcGCAGa -5'
10934 5' -54.3 NC_002794.1 + 77580 0.73 0.738854
Target:  5'- -cGCCGGcgucggggACCGcGCCgGGCGCGUCg -3'
miRNA:   3'- gaUGGCCa-------UGGUuUGGgCUGCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 78948 0.68 0.935409
Target:  5'- -gGCCGGU-CCGgcgucGGCuCCGGCGuCGUCg -3'
miRNA:   3'- gaUGGCCAuGGU-----UUG-GGCUGC-GCAGa -5'
10934 5' -54.3 NC_002794.1 + 81209 0.67 0.956822
Target:  5'- gCUGCCGGUGCUGuuCgCGcGCGCGcCg -3'
miRNA:   3'- -GAUGGCCAUGGUuuGgGC-UGCGCaGa -5'
10934 5' -54.3 NC_002794.1 + 83859 0.71 0.82069
Target:  5'- cCUGCgCGGUcACCAGucggcgccGCCCGAagGCGUCg -3'
miRNA:   3'- -GAUG-GCCA-UGGUU--------UGGGCUg-CGCAGa -5'
10934 5' -54.3 NC_002794.1 + 88346 0.7 0.882387
Target:  5'- gUGCCGGUcgacGCCGAcGgCCGGCGCGg-- -3'
miRNA:   3'- gAUGGCCA----UGGUU-UgGGCUGCGCaga -5'
10934 5' -54.3 NC_002794.1 + 99130 0.7 0.882387
Target:  5'- -aGCCGGcgacgACCG---CCGGCGCGUCUc -3'
miRNA:   3'- gaUGGCCa----UGGUuugGGCUGCGCAGA- -5'
10934 5' -54.3 NC_002794.1 + 100821 0.72 0.785629
Target:  5'- -cGCCGGUGgCGGcGCCCGAgGCGUa- -3'
miRNA:   3'- gaUGGCCAUgGUU-UGGGCUgCGCAga -5'
10934 5' -54.3 NC_002794.1 + 103629 0.66 0.980029
Target:  5'- -cGCCGGcgacGCCAAggaGCCCucGGCgGCGUCg -3'
miRNA:   3'- gaUGGCCa---UGGUU---UGGG--CUG-CGCAGa -5'
10934 5' -54.3 NC_002794.1 + 105082 0.66 0.980029
Target:  5'- gCUGCUGGUG---GACCUGACG-GUCg -3'
miRNA:   3'- -GAUGGCCAUgguUUGGGCUGCgCAGa -5'
10934 5' -54.3 NC_002794.1 + 109183 0.72 0.784723
Target:  5'- -gACCGGUuggaacgagcgggACCGAGCCCGGuCGCucGUCg -3'
miRNA:   3'- gaUGGCCA-------------UGGUUUGGGCU-GCG--CAGa -5'
10934 5' -54.3 NC_002794.1 + 110954 0.7 0.868152
Target:  5'- gCUGCCcaugGGUuCgGAACCCGGCGCGgagCg -3'
miRNA:   3'- -GAUGG----CCAuGgUUUGGGCUGCGCa--Ga -5'
10934 5' -54.3 NC_002794.1 + 113186 0.67 0.956822
Target:  5'- -cGCCGGcggaucgcacGCCGuucGCCCGGCGCGcCg -3'
miRNA:   3'- gaUGGCCa---------UGGUu--UGGGCUGCGCaGa -5'
10934 5' -54.3 NC_002794.1 + 113407 0.68 0.940148
Target:  5'- -gGCaCGGUcgGCCcGACCuCGACGcCGUCg -3'
miRNA:   3'- gaUG-GCCA--UGGuUUGG-GCUGC-GCAGa -5'
10934 5' -54.3 NC_002794.1 + 114909 0.72 0.803462
Target:  5'- cCUGCCGc-GCCAAGCUCGGguucCGCGUCa -3'
miRNA:   3'- -GAUGGCcaUGGUUUGGGCU----GCGCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.