miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10934 5' -54.3 NC_002794.1 + 187052 0.66 0.980029
Target:  5'- -cACCaGUACUGccCCCG-CGCGUCg -3'
miRNA:   3'- gaUGGcCAUGGUuuGGGCuGCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 185219 0.71 0.837253
Target:  5'- -gGCgGGgagcgGCgCGAGCCCGACgaGCGUCUg -3'
miRNA:   3'- gaUGgCCa----UG-GUUUGGGCUG--CGCAGA- -5'
10934 5' -54.3 NC_002794.1 + 183664 0.67 0.963503
Target:  5'- -gGCCGGgcGCCGcucggacGugCCGGCgGCGUCg -3'
miRNA:   3'- gaUGGCCa-UGGU-------UugGGCUG-CGCAGa -5'
10934 5' -54.3 NC_002794.1 + 183402 0.67 0.960435
Target:  5'- -cGCCucacGUACCu-GCCCGACGacCGUCUg -3'
miRNA:   3'- gaUGGc---CAUGGuuUGGGCUGC--GCAGA- -5'
10934 5' -54.3 NC_002794.1 + 182947 0.67 0.956822
Target:  5'- -gGCCGaGUACC--GCCUGGC-CGUCg -3'
miRNA:   3'- gaUGGC-CAUGGuuUGGGCUGcGCAGa -5'
10934 5' -54.3 NC_002794.1 + 180162 0.73 0.71945
Target:  5'- aCUACCGGUGCCAGuucaucuucACCgGACaguaCGUCg -3'
miRNA:   3'- -GAUGGCCAUGGUU---------UGGgCUGc---GCAGa -5'
10934 5' -54.3 NC_002794.1 + 179443 0.7 0.868152
Target:  5'- uUGgCGuUACCGGACCCGACGCcgaGUCc -3'
miRNA:   3'- gAUgGCcAUGGUUUGGGCUGCG---CAGa -5'
10934 5' -54.3 NC_002794.1 + 178283 0.68 0.930439
Target:  5'- -aACCGc-ACCGGACCCGACGCc--- -3'
miRNA:   3'- gaUGGCcaUGGUUUGGGCUGCGcaga -5'
10934 5' -54.3 NC_002794.1 + 177478 0.7 0.882387
Target:  5'- aCUcCCGGcgcgaUGCCGAGCCaaaCGACGgGUCUg -3'
miRNA:   3'- -GAuGGCC-----AUGGUUUGG---GCUGCgCAGA- -5'
10934 5' -54.3 NC_002794.1 + 176606 0.67 0.948936
Target:  5'- gUGCCGaccgGCCGcGGCCCccguGGCGCGUCUc -3'
miRNA:   3'- gAUGGCca--UGGU-UUGGG----CUGCGCAGA- -5'
10934 5' -54.3 NC_002794.1 + 176313 0.68 0.944656
Target:  5'- -cGCCGGUGUCGGACCCGGacUGCuUCg -3'
miRNA:   3'- gaUGGCCAUGGUUUGGGCU--GCGcAGa -5'
10934 5' -54.3 NC_002794.1 + 173671 0.68 0.925237
Target:  5'- -gGCCGG-ACUcacGAACCCGAuCGCGaUCa -3'
miRNA:   3'- gaUGGCCaUGG---UUUGGGCU-GCGC-AGa -5'
10934 5' -54.3 NC_002794.1 + 172525 0.67 0.967023
Target:  5'- ---aCGGUGCCGGuCCCGuCGCGa-- -3'
miRNA:   3'- gaugGCCAUGGUUuGGGCuGCGCaga -5'
10934 5' -54.3 NC_002794.1 + 166111 0.74 0.649697
Target:  5'- -gACCGGgcGCCGAGCCCGcgccgaGCGUCUc -3'
miRNA:   3'- gaUGGCCa-UGGUUUGGGCug----CGCAGA- -5'
10934 5' -54.3 NC_002794.1 + 162721 0.68 0.944656
Target:  5'- -cACCaGGUGCUgcgGGACCCGAcCGUGUUc -3'
miRNA:   3'- gaUGG-CCAUGG---UUUGGGCU-GCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 161309 0.66 0.972795
Target:  5'- -gACCGcGUGCUGAcCCCGuuccuCGUGUCg -3'
miRNA:   3'- gaUGGC-CAUGGUUuGGGCu----GCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 159570 0.71 0.845266
Target:  5'- aCUGCgGGUGcacgagcucgccCCGGACCCaGACGcCGUCg -3'
miRNA:   3'- -GAUGgCCAU------------GGUUUGGG-CUGC-GCAGa -5'
10934 5' -54.3 NC_002794.1 + 152194 0.66 0.980029
Target:  5'- -aGCCGGgcucUCGGGCCCGgGCGCGg-- -3'
miRNA:   3'- gaUGGCCau--GGUUUGGGC-UGCGCaga -5'
10934 5' -54.3 NC_002794.1 + 151441 0.68 0.930439
Target:  5'- -gGCCGGcGCCGAGCggcucgacgacaCCGGCGCGcCc -3'
miRNA:   3'- gaUGGCCaUGGUUUG------------GGCUGCGCaGa -5'
10934 5' -54.3 NC_002794.1 + 150145 0.67 0.948936
Target:  5'- aUugUGGU-CCAAcaGCCCGG-GCGUCUc -3'
miRNA:   3'- gAugGCCAuGGUU--UGGGCUgCGCAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.