Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10934 | 5' | -54.3 | NC_002794.1 | + | 12194 | 0.79 | 0.427745 |
Target: 5'- -cGCCGGgcCCGAGCgCCGACGgGUCg -3' miRNA: 3'- gaUGGCCauGGUUUG-GGCUGCgCAGa -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 161309 | 0.66 | 0.972795 |
Target: 5'- -gACCGcGUGCUGAcCCCGuuccuCGUGUCg -3' miRNA: 3'- gaUGGC-CAUGGUUuGGGCu----GCGCAGa -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 122565 | 0.66 | 0.972525 |
Target: 5'- --cCCGGUcucggaACCGAACCgcgacggCGACGCGUa- -3' miRNA: 3'- gauGGCCA------UGGUUUGG-------GCUGCGCAga -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 146781 | 0.66 | 0.969719 |
Target: 5'- ---gCGGUACCAGaagacguACCCGuCGCGcCg -3' miRNA: 3'- gaugGCCAUGGUU-------UGGGCuGCGCaGa -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 2874 | 0.66 | 0.970008 |
Target: 5'- -gGCgCGGUcGCCcucGCCCGGCGUGUg- -3' miRNA: 3'- gaUG-GCCA-UGGuu-UGGGCUGCGCAga -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 64062 | 0.67 | 0.968241 |
Target: 5'- aCUGCCGGgcgACCAcgugacuuGCCCuagaacacggucucGCGCGUCg -3' miRNA: 3'- -GAUGGCCa--UGGUu-------UGGGc-------------UGCGCAGa -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 137845 | 0.67 | 0.967023 |
Target: 5'- -cGCCGGgGCCGccgccggcgAACCCGcCGCGcCg -3' miRNA: 3'- gaUGGCCaUGGU---------UUGGGCuGCGCaGa -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 172525 | 0.67 | 0.967023 |
Target: 5'- ---aCGGUGCCGGuCCCGuCGCGa-- -3' miRNA: 3'- gaugGCCAUGGUUuGGGCuGCGCaga -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 13823 | 0.67 | 0.960435 |
Target: 5'- -cGCCGGcgACCAGACCagguccuGCGCGUa- -3' miRNA: 3'- gaUGGCCa-UGGUUUGGgc-----UGCGCAga -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 67545 | 0.66 | 0.972795 |
Target: 5'- -gACCGuGgcgACCGAGCCCgcccgGACGCGg-- -3' miRNA: 3'- gaUGGC-Ca--UGGUUUGGG-----CUGCGCaga -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 62275 | 0.66 | 0.972795 |
Target: 5'- gUACCGGU-UCAAACgaGAaCGUGUCUg -3' miRNA: 3'- gAUGGCCAuGGUUUGggCU-GCGCAGA- -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 136691 | 0.66 | 0.97539 |
Target: 5'- gCUGCUGGcgcagcUGCUGGAcCCCGugGCgGUCg -3' miRNA: 3'- -GAUGGCC------AUGGUUU-GGGCugCG-CAGa -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 103629 | 0.66 | 0.980029 |
Target: 5'- -cGCCGGcgacGCCAAggaGCCCucGGCgGCGUCg -3' miRNA: 3'- gaUGGCCa---UGGUU---UGGG--CUG-CGCAGa -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 187052 | 0.66 | 0.980029 |
Target: 5'- -cACCaGUACUGccCCCG-CGCGUCg -3' miRNA: 3'- gaUGGcCAUGGUuuGGGCuGCGCAGa -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 152194 | 0.66 | 0.980029 |
Target: 5'- -aGCCGGgcucUCGGGCCCGgGCGCGg-- -3' miRNA: 3'- gaUGGCCau--GGUUUGGGC-UGCGCaga -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 105082 | 0.66 | 0.980029 |
Target: 5'- gCUGCUGGUG---GACCUGACG-GUCg -3' miRNA: 3'- -GAUGGCCAUgguUUGGGCUGCgCAGa -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 69724 | 0.66 | 0.97539 |
Target: 5'- -cGCCGGUuucugGCC-GGCCCucuggGACGCGgUCUa -3' miRNA: 3'- gaUGGCCA-----UGGuUUGGG-----CUGCGC-AGA- -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 7942 | 0.66 | 0.977799 |
Target: 5'- -cGCCGGgccccGCCGcgaCCGuCGCGUCa -3' miRNA: 3'- gaUGGCCa----UGGUuugGGCuGCGCAGa -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 46203 | 0.66 | 0.97539 |
Target: 5'- -cGCCGaGgagGCCGAGCgggGGCGCGUCg -3' miRNA: 3'- gaUGGC-Ca--UGGUUUGgg-CUGCGCAGa -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 67437 | 0.66 | 0.97539 |
Target: 5'- -gACCGGgaugACCGgguGGCCCG-CGCG-Ca -3' miRNA: 3'- gaUGGCCa---UGGU---UUGGGCuGCGCaGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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