miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10935 3' -53.7 NC_002794.1 + 73370 0.66 0.980812
Target:  5'- gGGCUgaACGaGUCGGCGCCGcaggagggcuucuccGGCCGGa -3'
miRNA:   3'- -UCGAa-UGUgUAGCUGCGGUu--------------CCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 52831 0.66 0.980599
Target:  5'- cGGC---CGgGUCGACGUgCAGGGCCGc -3'
miRNA:   3'- -UCGaauGUgUAGCUGCG-GUUCCGGCu -5'
10935 3' -53.7 NC_002794.1 + 65951 0.66 0.980599
Target:  5'- cGCUgggaGCACG-CGAuuCGCCA-GGCCGu -3'
miRNA:   3'- uCGAa---UGUGUaGCU--GCGGUuCCGGCu -5'
10935 3' -53.7 NC_002794.1 + 141611 0.66 0.980599
Target:  5'- gAGC--GCGCGguccaCGGCGCCGcgucGGGCCa- -3'
miRNA:   3'- -UCGaaUGUGUa----GCUGCGGU----UCCGGcu -5'
10935 3' -53.7 NC_002794.1 + 38753 0.66 0.978376
Target:  5'- aGGCgUACgaguACGUCGACGuCCAAGuggugaaacacGCCGGu -3'
miRNA:   3'- -UCGaAUG----UGUAGCUGC-GGUUC-----------CGGCU- -5'
10935 3' -53.7 NC_002794.1 + 50541 0.66 0.978376
Target:  5'- cGGC--GCGCGgcgggCGGCGCUcGGGcCCGAg -3'
miRNA:   3'- -UCGaaUGUGUa----GCUGCGGuUCC-GGCU- -5'
10935 3' -53.7 NC_002794.1 + 114398 0.66 0.978376
Target:  5'- gAGCUcuUAUAUCGACGuCCGcucGGCCa- -3'
miRNA:   3'- -UCGAauGUGUAGCUGC-GGUu--CCGGcu -5'
10935 3' -53.7 NC_002794.1 + 155570 0.66 0.978376
Target:  5'- cGC-UACGCGUCcgucGCGCCGAGGagggaCGGu -3'
miRNA:   3'- uCGaAUGUGUAGc---UGCGGUUCCg----GCU- -5'
10935 3' -53.7 NC_002794.1 + 147689 0.66 0.978144
Target:  5'- cGCUU-CACGcCGcugcagcggaacuGCGCCAAcGGCCGGc -3'
miRNA:   3'- uCGAAuGUGUaGC-------------UGCGGUU-CCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 83118 0.66 0.97597
Target:  5'- aGGCgcggUGCuCcgCGGCGgCGGGGUCGGg -3'
miRNA:   3'- -UCGa---AUGuGuaGCUGCgGUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 113997 0.66 0.97597
Target:  5'- cAGCggACACAaCGACGUgcucuGGGCCa- -3'
miRNA:   3'- -UCGaaUGUGUaGCUGCGgu---UCCGGcu -5'
10935 3' -53.7 NC_002794.1 + 147915 0.66 0.97597
Target:  5'- cGGCgccGCGCGUccCGGCGCC--GGCUGGg -3'
miRNA:   3'- -UCGaa-UGUGUA--GCUGCGGuuCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 42149 0.66 0.97597
Target:  5'- uAGCgaccgcgACGuCAcCGACGCCGA-GCCGAc -3'
miRNA:   3'- -UCGaa-----UGU-GUaGCUGCGGUUcCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 125607 0.66 0.97597
Target:  5'- cAGCagACGCGcagCGACggagGCCGcgaAGGCCGGa -3'
miRNA:   3'- -UCGaaUGUGUa--GCUG----CGGU---UCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 68252 0.66 0.975211
Target:  5'- cGCUgagcgGCGCggaccggacucgucGUCGACGCCGAcGaCCGAg -3'
miRNA:   3'- uCGAa----UGUG--------------UAGCUGCGGUUcC-GGCU- -5'
10935 3' -53.7 NC_002794.1 + 84562 0.66 0.973373
Target:  5'- cAGCUUGCcCAgcccgacggaGACGCCG-GGCCa- -3'
miRNA:   3'- -UCGAAUGuGUag--------CUGCGGUuCCGGcu -5'
10935 3' -53.7 NC_002794.1 + 172925 0.66 0.973373
Target:  5'- cGGC--ACcCAUCGGCugGCCGacGGGCCGGc -3'
miRNA:   3'- -UCGaaUGuGUAGCUG--CGGU--UCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 88725 0.66 0.973102
Target:  5'- cGCgacgggaACgACGUCGGCGCCcccggcgAGGGCCGc -3'
miRNA:   3'- uCGaa-----UG-UGUAGCUGCGG-------UUCCGGCu -5'
10935 3' -53.7 NC_002794.1 + 42207 0.66 0.970579
Target:  5'- cGCUUACGCcgCGuccggcCGCCGguugugAGGCuCGAc -3'
miRNA:   3'- uCGAAUGUGuaGCu-----GCGGU------UCCG-GCU- -5'
10935 3' -53.7 NC_002794.1 + 72461 0.66 0.970579
Target:  5'- uGCUgcucCGCGUCGGCGUgGAGuaCGAc -3'
miRNA:   3'- uCGAau--GUGUAGCUGCGgUUCcgGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.