Results 21 - 40 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10935 | 3' | -53.7 | NC_002794.1 | + | 147689 | 0.66 | 0.978144 |
Target: 5'- cGCUU-CACGcCGcugcagcggaacuGCGCCAAcGGCCGGc -3' miRNA: 3'- uCGAAuGUGUaGC-------------UGCGGUU-CCGGCU- -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 125607 | 0.66 | 0.97597 |
Target: 5'- cAGCagACGCGcagCGACggagGCCGcgaAGGCCGGa -3' miRNA: 3'- -UCGaaUGUGUa--GCUG----CGGU---UCCGGCU- -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 147812 | 0.67 | 0.960948 |
Target: 5'- gAGUgcgUGCugGgcaCGGCGCUGAuGGCCGGc -3' miRNA: 3'- -UCGa--AUGugUa--GCUGCGGUU-CCGGCU- -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 151304 | 0.67 | 0.960948 |
Target: 5'- cGGCggcgGCGCccGUUGACGUCAcgcGGGaCCGAg -3' miRNA: 3'- -UCGaa--UGUG--UAGCUGCGGU---UCC-GGCU- -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 195673 | 0.67 | 0.960948 |
Target: 5'- cGCUcucGCACA-C-ACGCCAAcGGCCGGg -3' miRNA: 3'- uCGAa--UGUGUaGcUGCGGUU-CCGGCU- -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 94055 | 0.67 | 0.957303 |
Target: 5'- cGCUgguugGCGCAgCGGCGCgccgugcgCGAGGCCa- -3' miRNA: 3'- uCGAa----UGUGUaGCUGCG--------GUUCCGGcu -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 2252 | 0.67 | 0.957303 |
Target: 5'- uAGCg--UACcgCGGCGCCGuGGCCa- -3' miRNA: 3'- -UCGaauGUGuaGCUGCGGUuCCGGcu -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 67802 | 0.67 | 0.957303 |
Target: 5'- cGCgu-CGCAcCGAcCGUgAGGGCCGAa -3' miRNA: 3'- uCGaauGUGUaGCU-GCGgUUCCGGCU- -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 11692 | 0.67 | 0.960237 |
Target: 5'- cGGCgucuccacccgACACcgCGGCGCCcggcGAGGCCc- -3' miRNA: 3'- -UCGaa---------UGUGuaGCUGCGG----UUCCGGcu -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 181103 | 0.67 | 0.949331 |
Target: 5'- gAGCccgaaGC-CGUCGAgGCCGcugAGGCCGGc -3' miRNA: 3'- -UCGaa---UGuGUAGCUgCGGU---UCCGGCU- -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 103637 | 0.67 | 0.960948 |
Target: 5'- aAGCgcUACGCcggCGACGCCAAGGagcccUCGGc -3' miRNA: 3'- -UCGa-AUGUGua-GCUGCGGUUCC-----GGCU- -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 96897 | 0.67 | 0.964373 |
Target: 5'- uGCUggGCGCcgucggCGGCGCCGuGGCCu- -3' miRNA: 3'- uCGAa-UGUGua----GCUGCGGUuCCGGcu -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 151684 | 0.67 | 0.967581 |
Target: 5'- gAGCggcgGCuCGUCGACuCCGggcgaagccGGGCCGAc -3' miRNA: 3'- -UCGaa--UGuGUAGCUGcGGU---------UCCGGCU- -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 70877 | 0.67 | 0.967581 |
Target: 5'- cGCgccGCACGUCcGCGCCAAGcgacacCCGAa -3' miRNA: 3'- uCGaa-UGUGUAGcUGCGGUUCc-----GGCU- -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 43459 | 0.67 | 0.967581 |
Target: 5'- cGCUUACugAUCGcCGaCCugcugccccGGGCCGu -3' miRNA: 3'- uCGAAUGugUAGCuGC-GGu--------UCCGGCu -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 10513 | 0.67 | 0.964373 |
Target: 5'- cGCUcGCGCGcCGcCGCgAgcGGGCCGAa -3' miRNA: 3'- uCGAaUGUGUaGCuGCGgU--UCCGGCU- -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 134988 | 0.67 | 0.967581 |
Target: 5'- cGGCUcucaagUACAUCGGCGCCGuGGUCc- -3' miRNA: 3'- -UCGAau----GUGUAGCUGCGGUuCCGGcu -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 181258 | 0.67 | 0.964373 |
Target: 5'- gAGCgcgccggGCACcgCGACgggGCCGgagacgGGGCCGGg -3' miRNA: 3'- -UCGaa-----UGUGuaGCUG---CGGU------UCCGGCU- -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 148499 | 0.67 | 0.964373 |
Target: 5'- cGUUcGCGC-UCaa-GCCGAGGCCGAg -3' miRNA: 3'- uCGAaUGUGuAGcugCGGUUCCGGCU- -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 48322 | 0.67 | 0.948055 |
Target: 5'- cGCUUcgaaccgGCGCAccucucaccgaaCGACcugGCCAAGGCCGAg -3' miRNA: 3'- uCGAA-------UGUGUa-----------GCUG---CGGUUCCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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