Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10935 | 3' | -53.7 | NC_002794.1 | + | 81674 | 0.78 | 0.446271 |
Target: 5'- uGGCcagGCGCAgCGGCGCCAcGGCCGGc -3' miRNA: 3'- -UCGaa-UGUGUaGCUGCGGUuCCGGCU- -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 153395 | 0.76 | 0.582559 |
Target: 5'- uGGCgucgucCAUGUCGcgcGCGCCGGGGCCGAg -3' miRNA: 3'- -UCGaau---GUGUAGC---UGCGGUUCCGGCU- -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 58294 | 0.75 | 0.613219 |
Target: 5'- cGCgccGC-CGUCGcCGCCGGGGCCGGa -3' miRNA: 3'- uCGaa-UGuGUAGCuGCGGUUCCGGCU- -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 79777 | 0.74 | 0.654261 |
Target: 5'- cGCUcgGCGCggcgGUCGuCGCCGGGGUCGAg -3' miRNA: 3'- uCGAa-UGUG----UAGCuGCGGUUCCGGCU- -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 88350 | 0.74 | 0.695015 |
Target: 5'- gGGggUGCcgGUCGACGCCGAcGGCCGGc -3' miRNA: 3'- -UCgaAUGugUAGCUGCGGUU-CCGGCU- -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 136655 | 0.73 | 0.705094 |
Target: 5'- cGC--GCACGUCGGCGUCucGGCCGc -3' miRNA: 3'- uCGaaUGUGUAGCUGCGGuuCCGGCu -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 168389 | 0.73 | 0.705094 |
Target: 5'- cGGCUcgACucgucuCGUCG-CGCCGAGGCCGc -3' miRNA: 3'- -UCGAa-UGu-----GUAGCuGCGGUUCCGGCu -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 48655 | 0.73 | 0.744696 |
Target: 5'- -uCUUGC-CGUCGG-GCCGGGGCCGGg -3' miRNA: 3'- ucGAAUGuGUAGCUgCGGUUCCGGCU- -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 101871 | 0.73 | 0.744696 |
Target: 5'- cGCUcgGCGCGgacgcCGGCGCCGgcggcGGGCCGGc -3' miRNA: 3'- uCGAa-UGUGUa----GCUGCGGU-----UCCGGCU- -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 49198 | 0.73 | 0.72208 |
Target: 5'- gAGCcgUUGCugGacgaggaggacgucUCGGCGCuCGAGGCCGAc -3' miRNA: 3'- -UCG--AAUGugU--------------AGCUGCG-GUUCCGGCU- -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 133279 | 0.72 | 0.800941 |
Target: 5'- cAGCgccgcCGCcgcCGACGCCAGGGCCa- -3' miRNA: 3'- -UCGaau--GUGua-GCUGCGGUUCCGGcu -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 96050 | 0.72 | 0.791899 |
Target: 5'- cGCggGCGC--CGGCGCCGucGGCCGAc -3' miRNA: 3'- uCGaaUGUGuaGCUGCGGUu-CCGGCU- -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 93449 | 0.72 | 0.754372 |
Target: 5'- cGCg-ACGCGgcCGugGCCGAGGCCGc -3' miRNA: 3'- uCGaaUGUGUa-GCugCGGUUCCGGCu -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 69486 | 0.72 | 0.800941 |
Target: 5'- cGCU---GCGUgGGCGCCGGGGCCu- -3' miRNA: 3'- uCGAaugUGUAgCUGCGGUUCCGGcu -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 131948 | 0.71 | 0.835488 |
Target: 5'- cGCUcGCGCcgCGAcCGCCGcccGGCCGGc -3' miRNA: 3'- uCGAaUGUGuaGCU-GCGGUu--CCGGCU- -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 129016 | 0.71 | 0.818555 |
Target: 5'- gGGCgccGC-CGUCGGCGCggCGAGGCCGc -3' miRNA: 3'- -UCGaa-UGuGUAGCUGCG--GUUCCGGCu -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 137871 | 0.71 | 0.818555 |
Target: 5'- gAGCcgACGCgccaggccuucGUCGcCGCCGGGGCCGc -3' miRNA: 3'- -UCGaaUGUG-----------UAGCuGCGGUUCCGGCu -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 113413 | 0.71 | 0.843679 |
Target: 5'- cGGCUcgGCACGgucggcccgaccUCGACGCCGucGGCCu- -3' miRNA: 3'- -UCGAa-UGUGU------------AGCUGCGGUu-CCGGcu -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 163283 | 0.71 | 0.818555 |
Target: 5'- cGC--GCGCggCGGUGCCGGGGCCGGg -3' miRNA: 3'- uCGaaUGUGuaGCUGCGGUUCCGGCU- -5' |
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10935 | 3' | -53.7 | NC_002794.1 | + | 128466 | 0.71 | 0.843679 |
Target: 5'- cGGCgccaGCGUCGGCGCCAGcGUCGGc -3' miRNA: 3'- -UCGaaugUGUAGCUGCGGUUcCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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