miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10935 3' -53.7 NC_002794.1 + 81674 0.78 0.446271
Target:  5'- uGGCcagGCGCAgCGGCGCCAcGGCCGGc -3'
miRNA:   3'- -UCGaa-UGUGUaGCUGCGGUuCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 153395 0.76 0.582559
Target:  5'- uGGCgucgucCAUGUCGcgcGCGCCGGGGCCGAg -3'
miRNA:   3'- -UCGaau---GUGUAGC---UGCGGUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 58294 0.75 0.613219
Target:  5'- cGCgccGC-CGUCGcCGCCGGGGCCGGa -3'
miRNA:   3'- uCGaa-UGuGUAGCuGCGGUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 79777 0.74 0.654261
Target:  5'- cGCUcgGCGCggcgGUCGuCGCCGGGGUCGAg -3'
miRNA:   3'- uCGAa-UGUG----UAGCuGCGGUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 88350 0.74 0.695015
Target:  5'- gGGggUGCcgGUCGACGCCGAcGGCCGGc -3'
miRNA:   3'- -UCgaAUGugUAGCUGCGGUU-CCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 136655 0.73 0.705094
Target:  5'- cGC--GCACGUCGGCGUCucGGCCGc -3'
miRNA:   3'- uCGaaUGUGUAGCUGCGGuuCCGGCu -5'
10935 3' -53.7 NC_002794.1 + 168389 0.73 0.705094
Target:  5'- cGGCUcgACucgucuCGUCG-CGCCGAGGCCGc -3'
miRNA:   3'- -UCGAa-UGu-----GUAGCuGCGGUUCCGGCu -5'
10935 3' -53.7 NC_002794.1 + 49198 0.73 0.72208
Target:  5'- gAGCcgUUGCugGacgaggaggacgucUCGGCGCuCGAGGCCGAc -3'
miRNA:   3'- -UCG--AAUGugU--------------AGCUGCG-GUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 48655 0.73 0.744696
Target:  5'- -uCUUGC-CGUCGG-GCCGGGGCCGGg -3'
miRNA:   3'- ucGAAUGuGUAGCUgCGGUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 101871 0.73 0.744696
Target:  5'- cGCUcgGCGCGgacgcCGGCGCCGgcggcGGGCCGGc -3'
miRNA:   3'- uCGAa-UGUGUa----GCUGCGGU-----UCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 93449 0.72 0.754372
Target:  5'- cGCg-ACGCGgcCGugGCCGAGGCCGc -3'
miRNA:   3'- uCGaaUGUGUa-GCugCGGUUCCGGCu -5'
10935 3' -53.7 NC_002794.1 + 96050 0.72 0.791899
Target:  5'- cGCggGCGC--CGGCGCCGucGGCCGAc -3'
miRNA:   3'- uCGaaUGUGuaGCUGCGGUu-CCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 133279 0.72 0.800941
Target:  5'- cAGCgccgcCGCcgcCGACGCCAGGGCCa- -3'
miRNA:   3'- -UCGaau--GUGua-GCUGCGGUUCCGGcu -5'
10935 3' -53.7 NC_002794.1 + 69486 0.72 0.800941
Target:  5'- cGCU---GCGUgGGCGCCGGGGCCu- -3'
miRNA:   3'- uCGAaugUGUAgCUGCGGUUCCGGcu -5'
10935 3' -53.7 NC_002794.1 + 129016 0.71 0.818555
Target:  5'- gGGCgccGC-CGUCGGCGCggCGAGGCCGc -3'
miRNA:   3'- -UCGaa-UGuGUAGCUGCG--GUUCCGGCu -5'
10935 3' -53.7 NC_002794.1 + 163283 0.71 0.818555
Target:  5'- cGC--GCGCggCGGUGCCGGGGCCGGg -3'
miRNA:   3'- uCGaaUGUGuaGCUGCGGUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 137871 0.71 0.818555
Target:  5'- gAGCcgACGCgccaggccuucGUCGcCGCCGGGGCCGc -3'
miRNA:   3'- -UCGaaUGUG-----------UAGCuGCGGUUCCGGCu -5'
10935 3' -53.7 NC_002794.1 + 125538 0.71 0.835488
Target:  5'- cGCUUcgccCGCGaaGACGCCGAcGGCCGGg -3'
miRNA:   3'- uCGAAu---GUGUagCUGCGGUU-CCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 131948 0.71 0.835488
Target:  5'- cGCUcGCGCcgCGAcCGCCGcccGGCCGGc -3'
miRNA:   3'- uCGAaUGUGuaGCU-GCGGUu--CCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 128466 0.71 0.843679
Target:  5'- cGGCgccaGCGUCGGCGCCAGcGUCGGc -3'
miRNA:   3'- -UCGaaugUGUAGCUGCGGUUcCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.