miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10935 3' -53.7 NC_002794.1 + 128466 0.71 0.843679
Target:  5'- cGGCgccaGCGUCGGCGCCAGcGUCGGc -3'
miRNA:   3'- -UCGaaugUGUAGCUGCGGUUcCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 8395 0.7 0.851677
Target:  5'- cGGCgu-CGC-UCGGCGCgCGccGGGCCGAg -3'
miRNA:   3'- -UCGaauGUGuAGCUGCG-GU--UCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 85236 0.7 0.851677
Target:  5'- gAGCcgcgGCGCcgCGGCGgCGGGGUCGGg -3'
miRNA:   3'- -UCGaa--UGUGuaGCUGCgGUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 122292 0.7 0.858704
Target:  5'- cGGCc-GCACcgacuggAUCGACGCCAAGGCg-- -3'
miRNA:   3'- -UCGaaUGUG-------UAGCUGCGGUUCCGgcu -5'
10935 3' -53.7 NC_002794.1 + 86339 0.7 0.859475
Target:  5'- cGGCccGCGCucguUCGGCGUCG-GGCCGGg -3'
miRNA:   3'- -UCGaaUGUGu---AGCUGCGGUuCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 136152 0.7 0.859475
Target:  5'- cGCUggUGCGCAcCGACaCCuucGAGGCCGAc -3'
miRNA:   3'- uCGA--AUGUGUaGCUGcGG---UUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 163606 0.7 0.859475
Target:  5'- cAGCUgcugGCGC-UCGACgGCC--GGCCGAu -3'
miRNA:   3'- -UCGAa---UGUGuAGCUG-CGGuuCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 181577 0.7 0.867066
Target:  5'- cGGCUggaGCGUCaGCGUCGAGGCgCGGg -3'
miRNA:   3'- -UCGAaugUGUAGcUGCGGUUCCG-GCU- -5'
10935 3' -53.7 NC_002794.1 + 39458 0.7 0.867066
Target:  5'- cGGCcgGCGCcgCGGCcgcgGCCAcGGCCGGc -3'
miRNA:   3'- -UCGaaUGUGuaGCUG----CGGUuCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 75583 0.7 0.881605
Target:  5'- gGGCUUGCugGagcUCGAgcaCGCCGAGcCCGGg -3'
miRNA:   3'- -UCGAAUGugU---AGCU---GCGGUUCcGGCU- -5'
10935 3' -53.7 NC_002794.1 + 177051 0.7 0.881605
Target:  5'- cGGCcaACGgGUCGGCGaCCucGGCCGGc -3'
miRNA:   3'- -UCGaaUGUgUAGCUGC-GGuuCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 158112 0.7 0.887858
Target:  5'- cGGCggcgGCGCggCGGCGCCGGcgggagcGGCCGu -3'
miRNA:   3'- -UCGaa--UGUGuaGCUGCGGUU-------CCGGCu -5'
10935 3' -53.7 NC_002794.1 + 88877 0.69 0.895252
Target:  5'- cGGCcgGCACGgcgguggCGGCGCU--GGCCGAc -3'
miRNA:   3'- -UCGaaUGUGUa------GCUGCGGuuCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 179080 0.69 0.895252
Target:  5'- cGGC--ACGCGcCGACGCCAAaucGCCGAc -3'
miRNA:   3'- -UCGaaUGUGUaGCUGCGGUUc--CGGCU- -5'
10935 3' -53.7 NC_002794.1 + 81514 0.69 0.895252
Target:  5'- cAGCg-GCuCGUcCGcCGCCAGGGCCGGc -3'
miRNA:   3'- -UCGaaUGuGUA-GCuGCGGUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 84109 0.69 0.901731
Target:  5'- gAGCUgGCGCcgcgCGGCGCCGucgGGGCgGGc -3'
miRNA:   3'- -UCGAaUGUGua--GCUGCGGU---UCCGgCU- -5'
10935 3' -53.7 NC_002794.1 + 48886 0.69 0.913983
Target:  5'- cGCcUGuCGCgagGUCGGCGCCGccGGCCGAc -3'
miRNA:   3'- uCGaAU-GUG---UAGCUGCGGUu-CCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 50403 0.69 0.913983
Target:  5'- cGGCggACAgAUgGAgcgguCGCCgAAGGCCGAg -3'
miRNA:   3'- -UCGaaUGUgUAgCU-----GCGG-UUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 85427 0.69 0.913983
Target:  5'- cGGCUgucguCGUCgGugGCgGAGGCCGGc -3'
miRNA:   3'- -UCGAaugu-GUAG-CugCGgUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 128650 0.69 0.913983
Target:  5'- gGGCggUGCGC-UCGGCGCCGGgcGGCUa- -3'
miRNA:   3'- -UCGa-AUGUGuAGCUGCGGUU--CCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.