miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10935 3' -53.7 NC_002794.1 + 42207 0.66 0.970579
Target:  5'- cGCUUACGCcgCGuccggcCGCCGguugugAGGCuCGAc -3'
miRNA:   3'- uCGAAUGUGuaGCu-----GCGGU------UCCG-GCU- -5'
10935 3' -53.7 NC_002794.1 + 57907 0.66 0.970579
Target:  5'- cGGCggAUGCGUU--CGCCGAGGCCc- -3'
miRNA:   3'- -UCGaaUGUGUAGcuGCGGUUCCGGcu -5'
10935 3' -53.7 NC_002794.1 + 18245 0.67 0.967581
Target:  5'- cGGUcgauCGCuccUCGACGaCGAGGCCGAc -3'
miRNA:   3'- -UCGaau-GUGu--AGCUGCgGUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 151684 0.67 0.967581
Target:  5'- gAGCggcgGCuCGUCGACuCCGggcgaagccGGGCCGAc -3'
miRNA:   3'- -UCGaa--UGuGUAGCUGcGGU---------UCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 70877 0.67 0.967581
Target:  5'- cGCgccGCACGUCcGCGCCAAGcgacacCCGAa -3'
miRNA:   3'- uCGaa-UGUGUAGcUGCGGUUCc-----GGCU- -5'
10935 3' -53.7 NC_002794.1 + 43459 0.67 0.967581
Target:  5'- cGCUUACugAUCGcCGaCCugcugccccGGGCCGu -3'
miRNA:   3'- uCGAAUGugUAGCuGC-GGu--------UCCGGCu -5'
10935 3' -53.7 NC_002794.1 + 134988 0.67 0.967581
Target:  5'- cGGCUcucaagUACAUCGGCGCCGuGGUCc- -3'
miRNA:   3'- -UCGAau----GUGUAGCUGCGGUuCCGGcu -5'
10935 3' -53.7 NC_002794.1 + 96897 0.67 0.964373
Target:  5'- uGCUggGCGCcgucggCGGCGCCGuGGCCu- -3'
miRNA:   3'- uCGAa-UGUGua----GCUGCGGUuCCGGcu -5'
10935 3' -53.7 NC_002794.1 + 148499 0.67 0.964373
Target:  5'- cGUUcGCGC-UCaa-GCCGAGGCCGAg -3'
miRNA:   3'- uCGAaUGUGuAGcugCGGUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 181258 0.67 0.964373
Target:  5'- gAGCgcgccggGCACcgCGACgggGCCGgagacgGGGCCGGg -3'
miRNA:   3'- -UCGaa-----UGUGuaGCUG---CGGU------UCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 10513 0.67 0.964373
Target:  5'- cGCUcGCGCGcCGcCGCgAgcGGGCCGAa -3'
miRNA:   3'- uCGAaUGUGUaGCuGCGgU--UCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 103637 0.67 0.960948
Target:  5'- aAGCgcUACGCcggCGACGCCAAGGagcccUCGGc -3'
miRNA:   3'- -UCGa-AUGUGua-GCUGCGGUUCC-----GGCU- -5'
10935 3' -53.7 NC_002794.1 + 147812 0.67 0.960948
Target:  5'- gAGUgcgUGCugGgcaCGGCGCUGAuGGCCGGc -3'
miRNA:   3'- -UCGa--AUGugUa--GCUGCGGUU-CCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 151304 0.67 0.960948
Target:  5'- cGGCggcgGCGCccGUUGACGUCAcgcGGGaCCGAg -3'
miRNA:   3'- -UCGaa--UGUG--UAGCUGCGGU---UCC-GGCU- -5'
10935 3' -53.7 NC_002794.1 + 195673 0.67 0.960948
Target:  5'- cGCUcucGCACA-C-ACGCCAAcGGCCGGg -3'
miRNA:   3'- uCGAa--UGUGUaGcUGCGGUU-CCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 11692 0.67 0.960237
Target:  5'- cGGCgucuccacccgACACcgCGGCGCCcggcGAGGCCc- -3'
miRNA:   3'- -UCGaa---------UGUGuaGCUGCGG----UUCCGGcu -5'
10935 3' -53.7 NC_002794.1 + 67802 0.67 0.957303
Target:  5'- cGCgu-CGCAcCGAcCGUgAGGGCCGAa -3'
miRNA:   3'- uCGaauGUGUaGCU-GCGgUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 2252 0.67 0.957303
Target:  5'- uAGCg--UACcgCGGCGCCGuGGCCa- -3'
miRNA:   3'- -UCGaauGUGuaGCUGCGGUuCCGGcu -5'
10935 3' -53.7 NC_002794.1 + 94055 0.67 0.957303
Target:  5'- cGCUgguugGCGCAgCGGCGCgccgugcgCGAGGCCa- -3'
miRNA:   3'- uCGAa----UGUGUaGCUGCG--------GUUCCGGcu -5'
10935 3' -53.7 NC_002794.1 + 181103 0.67 0.949331
Target:  5'- gAGCccgaaGC-CGUCGAgGCCGcugAGGCCGGc -3'
miRNA:   3'- -UCGaa---UGuGUAGCUgCGGU---UCCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.