miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10935 3' -53.7 NC_002794.1 + 48322 0.67 0.948055
Target:  5'- cGCUUcgaaccgGCGCAccucucaccgaaCGACcugGCCAAGGCCGAg -3'
miRNA:   3'- uCGAA-------UGUGUa-----------GCUG---CGGUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 6808 0.68 0.944996
Target:  5'- gGGC-UGCGCGUCGcguacgGCGUCucGGGCCGc -3'
miRNA:   3'- -UCGaAUGUGUAGC------UGCGGu-UCCGGCu -5'
10935 3' -53.7 NC_002794.1 + 135852 0.68 0.940426
Target:  5'- cGGCgccgaGCGCAccgaccugcUCGACGCCGAcGCCGu -3'
miRNA:   3'- -UCGaa---UGUGU---------AGCUGCGGUUcCGGCu -5'
10935 3' -53.7 NC_002794.1 + 93391 0.68 0.940426
Target:  5'- uGCg-GCGCGUCGGCGUgccGGCCGGc -3'
miRNA:   3'- uCGaaUGUGUAGCUGCGguuCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 46190 0.68 0.940426
Target:  5'- gAGCggggGCGCGUCG-CGCUcgacuggccgcgGGGGCCGc -3'
miRNA:   3'- -UCGaa--UGUGUAGCuGCGG------------UUCCGGCu -5'
10935 3' -53.7 NC_002794.1 + 61662 0.68 0.940426
Target:  5'- cGGCUgguggggGC-CGUCGGuCGCCAAGcgaccGCCGAu -3'
miRNA:   3'- -UCGAa------UGuGUAGCU-GCGGUUC-----CGGCU- -5'
10935 3' -53.7 NC_002794.1 + 49870 0.68 0.935618
Target:  5'- gAGCgccCAgAaCGGcCGCCGGGGCCGGa -3'
miRNA:   3'- -UCGaauGUgUaGCU-GCGGUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 178369 0.68 0.935618
Target:  5'- cGUUUGCGaucgcCGACGCC--GGCCGAg -3'
miRNA:   3'- uCGAAUGUgua--GCUGCGGuuCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 81973 0.68 0.935618
Target:  5'- cGCggcGCGCGUCGGCGCgGucugcaggaAGGCCu- -3'
miRNA:   3'- uCGaa-UGUGUAGCUGCGgU---------UCCGGcu -5'
10935 3' -53.7 NC_002794.1 + 66671 0.68 0.93057
Target:  5'- cGGCcucCGgGUCGACGaCCGAgcGGCCGAc -3'
miRNA:   3'- -UCGaauGUgUAGCUGC-GGUU--CCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 178937 0.68 0.93057
Target:  5'- cGCcgACuguCGUCGGCGCCGAGccGCCa- -3'
miRNA:   3'- uCGaaUGu--GUAGCUGCGGUUC--CGGcu -5'
10935 3' -53.7 NC_002794.1 + 49679 0.68 0.93057
Target:  5'- ----aGCGCuUCGAgGCCGAGGCgCGGg -3'
miRNA:   3'- ucgaaUGUGuAGCUgCGGUUCCG-GCU- -5'
10935 3' -53.7 NC_002794.1 + 69290 0.68 0.929008
Target:  5'- cGGCggugcUGCugAUCaucuuaccgggacuGAgCGCCGAGGCCGGc -3'
miRNA:   3'- -UCGa----AUGugUAG--------------CU-GCGGUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 142286 0.68 0.927426
Target:  5'- cAGCUccgACagaaacaccgugucgGCGUCGGCGUCAccGGGCCGc -3'
miRNA:   3'- -UCGAa--UG---------------UGUAGCUGCGGU--UCCGGCu -5'
10935 3' -53.7 NC_002794.1 + 72300 0.68 0.925281
Target:  5'- gGGCUguuCGCcuUCGAgCGCCAcGGCCGc -3'
miRNA:   3'- -UCGAau-GUGu-AGCU-GCGGUuCCGGCu -5'
10935 3' -53.7 NC_002794.1 + 146505 0.68 0.924739
Target:  5'- cAGCUUGCGaucgcCGUCGauguggaagaagcGCGCCA-GGCCGc -3'
miRNA:   3'- -UCGAAUGU-----GUAGC-------------UGCGGUuCCGGCu -5'
10935 3' -53.7 NC_002794.1 + 50062 0.69 0.919752
Target:  5'- cGGCUcGgACGaCGACGCCGccGCCGGc -3'
miRNA:   3'- -UCGAaUgUGUaGCUGCGGUucCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 93723 0.69 0.919752
Target:  5'- cAGCgucuucgUGCGCuUCGgcggcgugcGCGCCGGGGCCa- -3'
miRNA:   3'- -UCGa------AUGUGuAGC---------UGCGGUUCCGGcu -5'
10935 3' -53.7 NC_002794.1 + 113206 0.69 0.919752
Target:  5'- aAGCgccGCGC-UCGACGCCGc-GCCGGc -3'
miRNA:   3'- -UCGaa-UGUGuAGCUGCGGUucCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 50403 0.69 0.913983
Target:  5'- cGGCggACAgAUgGAgcgguCGCCgAAGGCCGAg -3'
miRNA:   3'- -UCGaaUGUgUAgCU-----GCGG-UUCCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.