miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10935 3' -53.7 NC_002794.1 + 2252 0.67 0.957303
Target:  5'- uAGCg--UACcgCGGCGCCGuGGCCa- -3'
miRNA:   3'- -UCGaauGUGuaGCUGCGGUuCCGGcu -5'
10935 3' -53.7 NC_002794.1 + 6808 0.68 0.944996
Target:  5'- gGGC-UGCGCGUCGcguacgGCGUCucGGGCCGc -3'
miRNA:   3'- -UCGaAUGUGUAGC------UGCGGu-UCCGGCu -5'
10935 3' -53.7 NC_002794.1 + 8395 0.7 0.851677
Target:  5'- cGGCgu-CGC-UCGGCGCgCGccGGGCCGAg -3'
miRNA:   3'- -UCGaauGUGuAGCUGCG-GU--UCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 10513 0.67 0.964373
Target:  5'- cGCUcGCGCGcCGcCGCgAgcGGGCCGAa -3'
miRNA:   3'- uCGAaUGUGUaGCuGCGgU--UCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 11692 0.67 0.960237
Target:  5'- cGGCgucuccacccgACACcgCGGCGCCcggcGAGGCCc- -3'
miRNA:   3'- -UCGaa---------UGUGuaGCUGCGG----UUCCGGcu -5'
10935 3' -53.7 NC_002794.1 + 18245 0.67 0.967581
Target:  5'- cGGUcgauCGCuccUCGACGaCGAGGCCGAc -3'
miRNA:   3'- -UCGaau-GUGu--AGCUGCgGUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 38753 0.66 0.978376
Target:  5'- aGGCgUACgaguACGUCGACGuCCAAGuggugaaacacGCCGGu -3'
miRNA:   3'- -UCGaAUG----UGUAGCUGC-GGUUC-----------CGGCU- -5'
10935 3' -53.7 NC_002794.1 + 39458 0.7 0.867066
Target:  5'- cGGCcgGCGCcgCGGCcgcgGCCAcGGCCGGc -3'
miRNA:   3'- -UCGaaUGUGuaGCUG----CGGUuCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 42149 0.66 0.97597
Target:  5'- uAGCgaccgcgACGuCAcCGACGCCGA-GCCGAc -3'
miRNA:   3'- -UCGaa-----UGU-GUaGCUGCGGUUcCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 42207 0.66 0.970579
Target:  5'- cGCUUACGCcgCGuccggcCGCCGguugugAGGCuCGAc -3'
miRNA:   3'- uCGAAUGUGuaGCu-----GCGGU------UCCG-GCU- -5'
10935 3' -53.7 NC_002794.1 + 43459 0.67 0.967581
Target:  5'- cGCUUACugAUCGcCGaCCugcugccccGGGCCGu -3'
miRNA:   3'- uCGAAUGugUAGCuGC-GGu--------UCCGGCu -5'
10935 3' -53.7 NC_002794.1 + 46190 0.68 0.940426
Target:  5'- gAGCggggGCGCGUCG-CGCUcgacuggccgcgGGGGCCGc -3'
miRNA:   3'- -UCGaa--UGUGUAGCuGCGG------------UUCCGGCu -5'
10935 3' -53.7 NC_002794.1 + 48322 0.67 0.948055
Target:  5'- cGCUUcgaaccgGCGCAccucucaccgaaCGACcugGCCAAGGCCGAg -3'
miRNA:   3'- uCGAA-------UGUGUa-----------GCUG---CGGUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 48655 0.73 0.744696
Target:  5'- -uCUUGC-CGUCGG-GCCGGGGCCGGg -3'
miRNA:   3'- ucGAAUGuGUAGCUgCGGUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 48886 0.69 0.913983
Target:  5'- cGCcUGuCGCgagGUCGGCGCCGccGGCCGAc -3'
miRNA:   3'- uCGaAU-GUG---UAGCUGCGGUu-CCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 49198 0.73 0.72208
Target:  5'- gAGCcgUUGCugGacgaggaggacgucUCGGCGCuCGAGGCCGAc -3'
miRNA:   3'- -UCG--AAUGugU--------------AGCUGCG-GUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 49679 0.68 0.93057
Target:  5'- ----aGCGCuUCGAgGCCGAGGCgCGGg -3'
miRNA:   3'- ucgaaUGUGuAGCUgCGGUUCCG-GCU- -5'
10935 3' -53.7 NC_002794.1 + 49870 0.68 0.935618
Target:  5'- gAGCgccCAgAaCGGcCGCCGGGGCCGGa -3'
miRNA:   3'- -UCGaauGUgUaGCU-GCGGUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 50062 0.69 0.919752
Target:  5'- cGGCUcGgACGaCGACGCCGccGCCGGc -3'
miRNA:   3'- -UCGAaUgUGUaGCUGCGGUucCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 50403 0.69 0.913983
Target:  5'- cGGCggACAgAUgGAgcgguCGCCgAAGGCCGAg -3'
miRNA:   3'- -UCGaaUGUgUAgCU-----GCGG-UUCCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.