miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10935 3' -53.7 NC_002794.1 + 50541 0.66 0.978376
Target:  5'- cGGC--GCGCGgcgggCGGCGCUcGGGcCCGAg -3'
miRNA:   3'- -UCGaaUGUGUa----GCUGCGGuUCC-GGCU- -5'
10935 3' -53.7 NC_002794.1 + 52831 0.66 0.980599
Target:  5'- cGGC---CGgGUCGACGUgCAGGGCCGc -3'
miRNA:   3'- -UCGaauGUgUAGCUGCG-GUUCCGGCu -5'
10935 3' -53.7 NC_002794.1 + 57907 0.66 0.970579
Target:  5'- cGGCggAUGCGUU--CGCCGAGGCCc- -3'
miRNA:   3'- -UCGaaUGUGUAGcuGCGGUUCCGGcu -5'
10935 3' -53.7 NC_002794.1 + 58294 0.75 0.613219
Target:  5'- cGCgccGC-CGUCGcCGCCGGGGCCGGa -3'
miRNA:   3'- uCGaa-UGuGUAGCuGCGGUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 61662 0.68 0.940426
Target:  5'- cGGCUgguggggGC-CGUCGGuCGCCAAGcgaccGCCGAu -3'
miRNA:   3'- -UCGAa------UGuGUAGCU-GCGGUUC-----CGGCU- -5'
10935 3' -53.7 NC_002794.1 + 65951 0.66 0.980599
Target:  5'- cGCUgggaGCACG-CGAuuCGCCA-GGCCGu -3'
miRNA:   3'- uCGAa---UGUGUaGCU--GCGGUuCCGGCu -5'
10935 3' -53.7 NC_002794.1 + 66671 0.68 0.93057
Target:  5'- cGGCcucCGgGUCGACGaCCGAgcGGCCGAc -3'
miRNA:   3'- -UCGaauGUgUAGCUGC-GGUU--CCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 67802 0.67 0.957303
Target:  5'- cGCgu-CGCAcCGAcCGUgAGGGCCGAa -3'
miRNA:   3'- uCGaauGUGUaGCU-GCGgUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 68252 0.66 0.975211
Target:  5'- cGCUgagcgGCGCggaccggacucgucGUCGACGCCGAcGaCCGAg -3'
miRNA:   3'- uCGAa----UGUG--------------UAGCUGCGGUUcC-GGCU- -5'
10935 3' -53.7 NC_002794.1 + 69290 0.68 0.929008
Target:  5'- cGGCggugcUGCugAUCaucuuaccgggacuGAgCGCCGAGGCCGGc -3'
miRNA:   3'- -UCGa----AUGugUAG--------------CU-GCGGUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 69486 0.72 0.800941
Target:  5'- cGCU---GCGUgGGCGCCGGGGCCu- -3'
miRNA:   3'- uCGAaugUGUAgCUGCGGUUCCGGcu -5'
10935 3' -53.7 NC_002794.1 + 70877 0.67 0.967581
Target:  5'- cGCgccGCACGUCcGCGCCAAGcgacacCCGAa -3'
miRNA:   3'- uCGaa-UGUGUAGcUGCGGUUCc-----GGCU- -5'
10935 3' -53.7 NC_002794.1 + 72300 0.68 0.925281
Target:  5'- gGGCUguuCGCcuUCGAgCGCCAcGGCCGc -3'
miRNA:   3'- -UCGAau-GUGu-AGCU-GCGGUuCCGGCu -5'
10935 3' -53.7 NC_002794.1 + 72461 0.66 0.970579
Target:  5'- uGCUgcucCGCGUCGGCGUgGAGuaCGAc -3'
miRNA:   3'- uCGAau--GUGUAGCUGCGgUUCcgGCU- -5'
10935 3' -53.7 NC_002794.1 + 73370 0.66 0.980812
Target:  5'- gGGCUgaACGaGUCGGCGCCGcaggagggcuucuccGGCCGGa -3'
miRNA:   3'- -UCGAa-UGUgUAGCUGCGGUu--------------CCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 75583 0.7 0.881605
Target:  5'- gGGCUUGCugGagcUCGAgcaCGCCGAGcCCGGg -3'
miRNA:   3'- -UCGAAUGugU---AGCU---GCGGUUCcGGCU- -5'
10935 3' -53.7 NC_002794.1 + 79777 0.74 0.654261
Target:  5'- cGCUcgGCGCggcgGUCGuCGCCGGGGUCGAg -3'
miRNA:   3'- uCGAa-UGUG----UAGCuGCGGUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 81514 0.69 0.895252
Target:  5'- cAGCg-GCuCGUcCGcCGCCAGGGCCGGc -3'
miRNA:   3'- -UCGaaUGuGUA-GCuGCGGUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 81674 0.78 0.446271
Target:  5'- uGGCcagGCGCAgCGGCGCCAcGGCCGGc -3'
miRNA:   3'- -UCGaa-UGUGUaGCUGCGGUuCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 81973 0.68 0.935618
Target:  5'- cGCggcGCGCGUCGGCGCgGucugcaggaAGGCCu- -3'
miRNA:   3'- uCGaa-UGUGUAGCUGCGgU---------UCCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.