miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10935 3' -53.7 NC_002794.1 + 195673 0.67 0.960948
Target:  5'- cGCUcucGCACA-C-ACGCCAAcGGCCGGg -3'
miRNA:   3'- uCGAa--UGUGUaGcUGCGGUU-CCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 181577 0.7 0.867066
Target:  5'- cGGCUggaGCGUCaGCGUCGAGGCgCGGg -3'
miRNA:   3'- -UCGAaugUGUAGcUGCGGUUCCG-GCU- -5'
10935 3' -53.7 NC_002794.1 + 181258 0.67 0.964373
Target:  5'- gAGCgcgccggGCACcgCGACgggGCCGgagacgGGGCCGGg -3'
miRNA:   3'- -UCGaa-----UGUGuaGCUG---CGGU------UCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 181103 0.67 0.949331
Target:  5'- gAGCccgaaGC-CGUCGAgGCCGcugAGGCCGGc -3'
miRNA:   3'- -UCGaa---UGuGUAGCUgCGGU---UCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 179080 0.69 0.895252
Target:  5'- cGGC--ACGCGcCGACGCCAAaucGCCGAc -3'
miRNA:   3'- -UCGaaUGUGUaGCUGCGGUUc--CGGCU- -5'
10935 3' -53.7 NC_002794.1 + 178937 0.68 0.93057
Target:  5'- cGCcgACuguCGUCGGCGCCGAGccGCCa- -3'
miRNA:   3'- uCGaaUGu--GUAGCUGCGGUUC--CGGcu -5'
10935 3' -53.7 NC_002794.1 + 178369 0.68 0.935618
Target:  5'- cGUUUGCGaucgcCGACGCC--GGCCGAg -3'
miRNA:   3'- uCGAAUGUgua--GCUGCGGuuCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 177051 0.7 0.881605
Target:  5'- cGGCcaACGgGUCGGCGaCCucGGCCGGc -3'
miRNA:   3'- -UCGaaUGUgUAGCUGC-GGuuCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 172925 0.66 0.973373
Target:  5'- cGGC--ACcCAUCGGCugGCCGacGGGCCGGc -3'
miRNA:   3'- -UCGaaUGuGUAGCUG--CGGU--UCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 168389 0.73 0.705094
Target:  5'- cGGCUcgACucgucuCGUCG-CGCCGAGGCCGc -3'
miRNA:   3'- -UCGAa-UGu-----GUAGCuGCGGUUCCGGCu -5'
10935 3' -53.7 NC_002794.1 + 163606 0.7 0.859475
Target:  5'- cAGCUgcugGCGC-UCGACgGCC--GGCCGAu -3'
miRNA:   3'- -UCGAa---UGUGuAGCUG-CGGuuCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 163283 0.71 0.818555
Target:  5'- cGC--GCGCggCGGUGCCGGGGCCGGg -3'
miRNA:   3'- uCGaaUGUGuaGCUGCGGUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 158112 0.7 0.887858
Target:  5'- cGGCggcgGCGCggCGGCGCCGGcgggagcGGCCGu -3'
miRNA:   3'- -UCGaa--UGUGuaGCUGCGGUU-------CCGGCu -5'
10935 3' -53.7 NC_002794.1 + 155570 0.66 0.978376
Target:  5'- cGC-UACGCGUCcgucGCGCCGAGGagggaCGGu -3'
miRNA:   3'- uCGaAUGUGUAGc---UGCGGUUCCg----GCU- -5'
10935 3' -53.7 NC_002794.1 + 153395 0.76 0.582559
Target:  5'- uGGCgucgucCAUGUCGcgcGCGCCGGGGCCGAg -3'
miRNA:   3'- -UCGaau---GUGUAGC---UGCGGUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 151684 0.67 0.967581
Target:  5'- gAGCggcgGCuCGUCGACuCCGggcgaagccGGGCCGAc -3'
miRNA:   3'- -UCGaa--UGuGUAGCUGcGGU---------UCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 151304 0.67 0.960948
Target:  5'- cGGCggcgGCGCccGUUGACGUCAcgcGGGaCCGAg -3'
miRNA:   3'- -UCGaa--UGUG--UAGCUGCGGU---UCC-GGCU- -5'
10935 3' -53.7 NC_002794.1 + 148499 0.67 0.964373
Target:  5'- cGUUcGCGC-UCaa-GCCGAGGCCGAg -3'
miRNA:   3'- uCGAaUGUGuAGcugCGGUUCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 147915 0.66 0.97597
Target:  5'- cGGCgccGCGCGUccCGGCGCC--GGCUGGg -3'
miRNA:   3'- -UCGaa-UGUGUA--GCUGCGGuuCCGGCU- -5'
10935 3' -53.7 NC_002794.1 + 147812 0.67 0.960948
Target:  5'- gAGUgcgUGCugGgcaCGGCGCUGAuGGCCGGc -3'
miRNA:   3'- -UCGa--AUGugUa--GCUGCGGUU-CCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.