miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10935 5' -51.8 NC_002794.1 + 80882 0.66 0.99098
Target:  5'- -cUCGGCgCAGGCGUCc-UGuaGUUCGc -3'
miRNA:   3'- uaAGUCG-GUCCGUAGuuACcgCAAGU- -5'
10935 5' -51.8 NC_002794.1 + 20662 0.66 0.984755
Target:  5'- cUUCGGCCuuGGCGUCGAUGuguaagcuguaucGCGUa-- -3'
miRNA:   3'- uAAGUCGGu-CCGUAGUUAC-------------CGCAagu -5'
10935 5' -51.8 NC_002794.1 + 141126 0.67 0.980948
Target:  5'- cGUUCAGCgAguuGGUGUCcGUGGCGUcguUCGa -3'
miRNA:   3'- -UAAGUCGgU---CCGUAGuUACCGCA---AGU- -5'
10935 5' -51.8 NC_002794.1 + 19252 0.67 0.97355
Target:  5'- --gCGGCCGgcacGGcCAUCcucGUGGCGUUCGg -3'
miRNA:   3'- uaaGUCGGU----CC-GUAGu--UACCGCAAGU- -5'
10935 5' -51.8 NC_002794.1 + 85435 0.67 0.970674
Target:  5'- ---aAGCCGGGCGgcugucgucgUCGGUGGCGg--- -3'
miRNA:   3'- uaagUCGGUCCGU----------AGUUACCGCaagu -5'
10935 5' -51.8 NC_002794.1 + 127571 0.68 0.967581
Target:  5'- --cCAGCCGGGCGUaCGaacgccucGUGGCGgcCGa -3'
miRNA:   3'- uaaGUCGGUCCGUA-GU--------UACCGCaaGU- -5'
10935 5' -51.8 NC_002794.1 + 81299 0.68 0.967581
Target:  5'- cUUCGGCCAGGCgcagcGUCAGcggagGGUGcUCGu -3'
miRNA:   3'- uAAGUCGGUCCG-----UAGUUa----CCGCaAGU- -5'
10935 5' -51.8 NC_002794.1 + 44016 0.69 0.939342
Target:  5'- cGUUCGGCgAGGCGUUcAUcGGCGcgCAu -3'
miRNA:   3'- -UAAGUCGgUCCGUAGuUA-CCGCaaGU- -5'
10935 5' -51.8 NC_002794.1 + 11736 0.71 0.891974
Target:  5'- -cUC-GCC-GGCGUCAcguagaccGUGGCGUUCGg -3'
miRNA:   3'- uaAGuCGGuCCGUAGU--------UACCGCAAGU- -5'
10935 5' -51.8 NC_002794.1 + 53054 0.71 0.877632
Target:  5'- aGUUCGGCCGGGUcggccucguUCAacgcGUGcGCGUUCAg -3'
miRNA:   3'- -UAAGUCGGUCCGu--------AGU----UAC-CGCAAGU- -5'
10935 5' -51.8 NC_002794.1 + 195261 0.73 0.792926
Target:  5'- cGUUCguGGCCGGGUgcgGUCAggcggcccgguGUGGCGUUCGc -3'
miRNA:   3'- -UAAG--UCGGUCCG---UAGU-----------UACCGCAAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.