miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10937 3' -58.5 NC_002794.1 + 12209 0.66 0.864181
Target:  5'- gGGCCGccuucuccgcGCCGGGcCCGAG-CGCCg-- -3'
miRNA:   3'- gCCGGC----------CGGUCUuGGCUCaGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 61260 0.66 0.864181
Target:  5'- gGGCCGacuCCGGAucccGCCGAGuugaccgccaUCGCCUGc -3'
miRNA:   3'- gCCGGCc--GGUCU----UGGCUC----------AGUGGAUa -5'
10937 3' -58.5 NC_002794.1 + 77350 0.66 0.864181
Target:  5'- gGGCCGaCCAGGACCGcccgCugCUGc -3'
miRNA:   3'- gCCGGCcGGUCUUGGCuca-GugGAUa -5'
10937 3' -58.5 NC_002794.1 + 74641 0.66 0.864181
Target:  5'- gGGgCGGCCGccGCCGcuacAGUCGCCg-- -3'
miRNA:   3'- gCCgGCCGGUcuUGGC----UCAGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 170319 0.66 0.856749
Target:  5'- uGaGCCGGCCAGucucAGCCGccguUCACCUu- -3'
miRNA:   3'- gC-CGGCCGGUC----UUGGCuc--AGUGGAua -5'
10937 3' -58.5 NC_002794.1 + 72595 0.66 0.856749
Target:  5'- cCGGCUGGUCcGGGCCGcGGUCgucgcgggagACCUGc -3'
miRNA:   3'- -GCCGGCCGGuCUUGGC-UCAG----------UGGAUa -5'
10937 3' -58.5 NC_002794.1 + 152617 0.66 0.856749
Target:  5'- gCGGCacCGGCCGGAacGCCGGGUgguagCACUc-- -3'
miRNA:   3'- -GCCG--GCCGGUCU--UGGCUCA-----GUGGaua -5'
10937 3' -58.5 NC_002794.1 + 48807 0.66 0.856749
Target:  5'- gCGGCCGGUCuaAGGACgGAGcCGCg--- -3'
miRNA:   3'- -GCCGGCCGG--UCUUGgCUCaGUGgaua -5'
10937 3' -58.5 NC_002794.1 + 139600 0.66 0.849126
Target:  5'- gGGCaCGGCCAccGGGCCGAG-CAgCa-- -3'
miRNA:   3'- gCCG-GCCGGU--CUUGGCUCaGUgGaua -5'
10937 3' -58.5 NC_002794.1 + 79718 0.66 0.849126
Target:  5'- gCGGCggCGGCCAGGGCCug--CACCg-- -3'
miRNA:   3'- -GCCG--GCCGGUCUUGGcucaGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 135869 0.66 0.841317
Target:  5'- uGGCUGcGCCAGuucaccggcGCCGAGcgCACCg-- -3'
miRNA:   3'- gCCGGC-CGGUCu--------UGGCUCa-GUGGaua -5'
10937 3' -58.5 NC_002794.1 + 134036 0.66 0.841317
Target:  5'- gCGGCC-GCCGGcGGCCGGcGUCACUc-- -3'
miRNA:   3'- -GCCGGcCGGUC-UUGGCU-CAGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 60297 0.66 0.841317
Target:  5'- gGGCgcaGGCCGGcGACCGAucggaaacGUCGCCg-- -3'
miRNA:   3'- gCCGg--CCGGUC-UUGGCU--------CAGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 169205 0.66 0.840526
Target:  5'- gCGGCCGGCUcgucggcGGggUgGAG-CGCCa-- -3'
miRNA:   3'- -GCCGGCCGG-------UCuuGgCUCaGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 15473 0.66 0.833328
Target:  5'- -uGCCGGCCAGcugcucgaacggGACCGAcGUCGCg--- -3'
miRNA:   3'- gcCGGCCGGUC------------UUGGCU-CAGUGgaua -5'
10937 3' -58.5 NC_002794.1 + 6200 0.66 0.833328
Target:  5'- cCGGCUGGCC-GAGC--GGUCGCCc-- -3'
miRNA:   3'- -GCCGGCCGGuCUUGgcUCAGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 189014 0.66 0.833328
Target:  5'- gGGCCGGCCGGAGagGAGgacuCCa-- -3'
miRNA:   3'- gCCGGCCGGUCUUggCUCagu-GGaua -5'
10937 3' -58.5 NC_002794.1 + 151302 0.66 0.830897
Target:  5'- gCGGCgGcGCCcguugacgucacgcGGGACCGAGcCACCg-- -3'
miRNA:   3'- -GCCGgC-CGG--------------UCUUGGCUCaGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 95917 0.67 0.825166
Target:  5'- gCGGCuguuCGGCCGGAccGCCGAcggCGCCa-- -3'
miRNA:   3'- -GCCG----GCCGGUCU--UGGCUca-GUGGaua -5'
10937 3' -58.5 NC_002794.1 + 177580 0.67 0.825166
Target:  5'- gGcGCCGaGCCuucGAACCGAGcCGCCc-- -3'
miRNA:   3'- gC-CGGC-CGGu--CUUGGCUCaGUGGaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.