miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10937 3' -58.5 NC_002794.1 + 46646 0.79 0.225558
Target:  5'- cCGGCUGGCCGGAAgCGAGgCGCCg-- -3'
miRNA:   3'- -GCCGGCCGGUCUUgGCUCaGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 145484 0.75 0.363052
Target:  5'- cCGGCCGG-CAGGACCGAGUCGu---- -3'
miRNA:   3'- -GCCGGCCgGUCUUGGCUCAGUggaua -5'
10937 3' -58.5 NC_002794.1 + 61663 0.75 0.363052
Target:  5'- uCGGCUGGUgGGGGCCGucGGUCGCCa-- -3'
miRNA:   3'- -GCCGGCCGgUCUUGGC--UCAGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 14411 0.75 0.390132
Target:  5'- gGGCCGcCCGGAggacgucuuacccgcGCCGAGUCGCCa-- -3'
miRNA:   3'- gCCGGCcGGUCU---------------UGGCUCAGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 137437 0.74 0.403324
Target:  5'- gCGGCCGccGCCAGAcGCCGAGgccacgcugCGCCUGg -3'
miRNA:   3'- -GCCGGC--CGGUCU-UGGCUCa--------GUGGAUa -5'
10937 3' -58.5 NC_002794.1 + 7067 0.74 0.411711
Target:  5'- gCGGCCGGCCcc-GCCGAG-CGCCg-- -3'
miRNA:   3'- -GCCGGCCGGucuUGGCUCaGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 118894 0.74 0.411711
Target:  5'- cCGGCCGGCCc--GCCGAGcUCgACCUGg -3'
miRNA:   3'- -GCCGGCCGGucuUGGCUC-AG-UGGAUa -5'
10937 3' -58.5 NC_002794.1 + 74461 0.74 0.411711
Target:  5'- gCGGCCGgcGCCGGGACCGcgaccGUCGCCg-- -3'
miRNA:   3'- -GCCGGC--CGGUCUUGGCu----CAGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 109074 0.73 0.473295
Target:  5'- cCGGCCGcuCCGGAACCGAG--ACCUAg -3'
miRNA:   3'- -GCCGGCc-GGUCUUGGCUCagUGGAUa -5'
10937 3' -58.5 NC_002794.1 + 14274 0.73 0.482471
Target:  5'- aGGCUgcgGGCCGcGACCGGGUCGCCc-- -3'
miRNA:   3'- gCCGG---CCGGUcUUGGCUCAGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 108815 0.72 0.491733
Target:  5'- cCGGCgCGGCuCGGGGCCGGGU--CCUGUa -3'
miRNA:   3'- -GCCG-GCCG-GUCUUGGCUCAguGGAUA- -5'
10937 3' -58.5 NC_002794.1 + 9573 0.72 0.519989
Target:  5'- gCGGCaccgCGGCCAGGcgGCCG-GUCGCCg-- -3'
miRNA:   3'- -GCCG----GCCGGUCU--UGGCuCAGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 141000 0.72 0.519989
Target:  5'- aGGCCGGCgCGGGccGCCGcagcGUCGCCUu- -3'
miRNA:   3'- gCCGGCCG-GUCU--UGGCu---CAGUGGAua -5'
10937 3' -58.5 NC_002794.1 + 120573 0.72 0.52955
Target:  5'- cCGGCCGGCCGGcgccucgccAGCCGAcauGgcgaCACCUAg -3'
miRNA:   3'- -GCCGGCCGGUC---------UUGGCU---Ca---GUGGAUa -5'
10937 3' -58.5 NC_002794.1 + 176264 0.71 0.568384
Target:  5'- cCGGcCCGGCgAGcGGCCGAGcCACCg-- -3'
miRNA:   3'- -GCC-GGCCGgUC-UUGGCUCaGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 6284 0.71 0.568384
Target:  5'- uCGGCCGGCCcGGGCCG-G-CGCCc-- -3'
miRNA:   3'- -GCCGGCCGGuCUUGGCuCaGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 79926 0.71 0.578212
Target:  5'- gCGGCgGGCCGGcccGCCGcguGUCGCCg-- -3'
miRNA:   3'- -GCCGgCCGGUCu--UGGCu--CAGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 73516 0.71 0.597972
Target:  5'- uGGCCGuCCGGAgcACCGAgGUCugCUAc -3'
miRNA:   3'- gCCGGCcGGUCU--UGGCU-CAGugGAUa -5'
10937 3' -58.5 NC_002794.1 + 14111 0.71 0.597972
Target:  5'- gCGGCCGGCCAGcccgcugacGCCGAuggCGCCg-- -3'
miRNA:   3'- -GCCGGCCGGUCu--------UGGCUca-GUGGaua -5'
10937 3' -58.5 NC_002794.1 + 124620 0.71 0.597972
Target:  5'- gCGGCCGGCguGGACCG-G-CACgUAg -3'
miRNA:   3'- -GCCGGCCGguCUUGGCuCaGUGgAUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.