miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10937 3' -58.5 NC_002794.1 + 95917 0.67 0.825166
Target:  5'- gCGGCuguuCGGCCGGAccGCCGAcggCGCCa-- -3'
miRNA:   3'- -GCCG----GCCGGUCU--UGGCUca-GUGGaua -5'
10937 3' -58.5 NC_002794.1 + 157422 0.67 0.825166
Target:  5'- gCGGCgGGCCGGA-CUGAGgaGCCg-- -3'
miRNA:   3'- -GCCGgCCGGUCUuGGCUCagUGGaua -5'
10937 3' -58.5 NC_002794.1 + 53900 0.67 0.816838
Target:  5'- uGGaCGGCCGGGaugAUCGAGUCGCa--- -3'
miRNA:   3'- gCCgGCCGGUCU---UGGCUCAGUGgaua -5'
10937 3' -58.5 NC_002794.1 + 184897 0.67 0.816838
Target:  5'- gGGCCGGCCgAGAcguCCGA--UGCCUGc -3'
miRNA:   3'- gCCGGCCGG-UCUu--GGCUcaGUGGAUa -5'
10937 3' -58.5 NC_002794.1 + 86317 0.67 0.808351
Target:  5'- gGGCCGGgCGG-ACCG-GUCuACCUc- -3'
miRNA:   3'- gCCGGCCgGUCuUGGCuCAG-UGGAua -5'
10937 3' -58.5 NC_002794.1 + 68067 0.67 0.808351
Target:  5'- uCGGCCGGCU----CCGAGUCgacGCCg-- -3'
miRNA:   3'- -GCCGGCCGGucuuGGCUCAG---UGGaua -5'
10937 3' -58.5 NC_002794.1 + 91587 0.67 0.807494
Target:  5'- uCGGCCGGCaccgugccgaaCAGGaucucggGCCGGGUgCACUUGa -3'
miRNA:   3'- -GCCGGCCG-----------GUCU-------UGGCUCA-GUGGAUa -5'
10937 3' -58.5 NC_002794.1 + 50335 0.67 0.799714
Target:  5'- aGGCCGGCCcGAGCgccuCGGG-CGCCc-- -3'
miRNA:   3'- gCCGGCCGGuCUUG----GCUCaGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 179547 0.67 0.797094
Target:  5'- gCGGCCGGCUGGAucccccugccccugGCCG-G-CACCg-- -3'
miRNA:   3'- -GCCGGCCGGUCU--------------UGGCuCaGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 48369 0.67 0.790934
Target:  5'- uCGaGCUGGCCgAGAgcuucACCGAGUUccucgGCCUGg -3'
miRNA:   3'- -GC-CGGCCGG-UCU-----UGGCUCAG-----UGGAUa -5'
10937 3' -58.5 NC_002794.1 + 127109 0.67 0.782018
Target:  5'- aGGCCGacugaGCCGGGccGCCGGGgCGCCg-- -3'
miRNA:   3'- gCCGGC-----CGGUCU--UGGCUCaGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 109010 0.67 0.782018
Target:  5'- nCGGCCccGCCGGGAUUGGGUCuGCCg-- -3'
miRNA:   3'- -GCCGGc-CGGUCUUGGCUCAG-UGGaua -5'
10937 3' -58.5 NC_002794.1 + 172916 0.67 0.782018
Target:  5'- uCGGCUGGCCGacGGGCCG-G-CGCCg-- -3'
miRNA:   3'- -GCCGGCCGGU--CUUGGCuCaGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 181078 0.68 0.772975
Target:  5'- aGGCCGGCgAG-GCCGGcGUgACCg-- -3'
miRNA:   3'- gCCGGCCGgUCuUGGCU-CAgUGGaua -5'
10937 3' -58.5 NC_002794.1 + 153994 0.68 0.772975
Target:  5'- -cGCCGGgCAGGGCCGGG-CGCUg-- -3'
miRNA:   3'- gcCGGCCgGUCUUGGCUCaGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 77599 0.68 0.772975
Target:  5'- aGGUCGGCCGGGGCgGcGG-CGCCg-- -3'
miRNA:   3'- gCCGGCCGGUCUUGgC-UCaGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 161090 0.68 0.763813
Target:  5'- gCGGCaCGGCCGcccgcgccAGCCGAGUCgGCCg-- -3'
miRNA:   3'- -GCCG-GCCGGUc-------UUGGCUCAG-UGGaua -5'
10937 3' -58.5 NC_002794.1 + 13624 0.68 0.761042
Target:  5'- aGGCCgcagcaGGCCAGGaggagcgacagcgcGCCGAGUC-CCg-- -3'
miRNA:   3'- gCCGG------CCGGUCU--------------UGGCUCAGuGGaua -5'
10937 3' -58.5 NC_002794.1 + 39435 0.68 0.754541
Target:  5'- aCGGCCGGCgGGugagaGACCG-GUCGCg--- -3'
miRNA:   3'- -GCCGGCCGgUC-----UUGGCuCAGUGgaua -5'
10937 3' -58.5 NC_002794.1 + 49925 0.68 0.754541
Target:  5'- gGGCCGGCgAGAGCgguucggGAGUCGCg--- -3'
miRNA:   3'- gCCGGCCGgUCUUGg------CUCAGUGgaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.