miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10937 3' -58.5 NC_002794.1 + 6200 0.66 0.833328
Target:  5'- cCGGCUGGCC-GAGC--GGUCGCCc-- -3'
miRNA:   3'- -GCCGGCCGGuCUUGgcUCAGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 6284 0.71 0.568384
Target:  5'- uCGGCCGGCCcGGGCCG-G-CGCCc-- -3'
miRNA:   3'- -GCCGGCCGGuCUUGGCuCaGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 7067 0.74 0.411711
Target:  5'- gCGGCCGGCCcc-GCCGAG-CGCCg-- -3'
miRNA:   3'- -GCCGGCCGGucuUGGCUCaGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 9573 0.72 0.519989
Target:  5'- gCGGCaccgCGGCCAGGcgGCCG-GUCGCCg-- -3'
miRNA:   3'- -GCCG----GCCGGUCU--UGGCuCAGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 12209 0.66 0.864181
Target:  5'- gGGCCGccuucuccgcGCCGGGcCCGAG-CGCCg-- -3'
miRNA:   3'- gCCGGC----------CGGUCUuGGCUCaGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 12686 0.7 0.617826
Target:  5'- cCGaGCCGGUCgGGGACCGAGacgCGCCg-- -3'
miRNA:   3'- -GC-CGGCCGG-UCUUGGCUCa--GUGGaua -5'
10937 3' -58.5 NC_002794.1 + 13360 0.68 0.735699
Target:  5'- gGGCCGGUCAGGuacgcguaGCgGAG-CACCg-- -3'
miRNA:   3'- gCCGGCCGGUCU--------UGgCUCaGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 13624 0.68 0.761042
Target:  5'- aGGCCgcagcaGGCCAGGaggagcgacagcgcGCCGAGUC-CCg-- -3'
miRNA:   3'- gCCGG------CCGGUCU--------------UGGCUCAGuGGaua -5'
10937 3' -58.5 NC_002794.1 + 14111 0.71 0.597972
Target:  5'- gCGGCCGGCCAGcccgcugacGCCGAuggCGCCg-- -3'
miRNA:   3'- -GCCGGCCGGUCu--------UGGCUca-GUGGaua -5'
10937 3' -58.5 NC_002794.1 + 14274 0.73 0.482471
Target:  5'- aGGCUgcgGGCCGcGACCGGGUCGCCc-- -3'
miRNA:   3'- gCCGG---CCGGUcUUGGCUCAGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 14318 0.68 0.735699
Target:  5'- cCGGCgGGCCGGcGCUcucGGUCGCCg-- -3'
miRNA:   3'- -GCCGgCCGGUCuUGGc--UCAGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 14411 0.75 0.390132
Target:  5'- gGGCCGcCCGGAggacgucuuacccgcGCCGAGUCGCCa-- -3'
miRNA:   3'- gCCGGCcGGUCU---------------UGGCUCAGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 15473 0.66 0.833328
Target:  5'- -uGCCGGCCAGcugcucgaacggGACCGAcGUCGCg--- -3'
miRNA:   3'- gcCGGCCGGUC------------UUGGCU-CAGUGgaua -5'
10937 3' -58.5 NC_002794.1 + 17059 0.69 0.716516
Target:  5'- gCGGCuCGGCCcgggGGGACCGGG-CACUc-- -3'
miRNA:   3'- -GCCG-GCCGG----UCUUGGCUCaGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 39435 0.68 0.754541
Target:  5'- aCGGCCGGCgGGugagaGACCG-GUCGCg--- -3'
miRNA:   3'- -GCCGGCCGgUC-----UUGGCuCAGUGgaua -5'
10937 3' -58.5 NC_002794.1 + 44880 0.69 0.697061
Target:  5'- uCGGCCGGUCuGGACgaCGAGcUCGCCc-- -3'
miRNA:   3'- -GCCGGCCGGuCUUG--GCUC-AGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 46646 0.79 0.225558
Target:  5'- cCGGCUGGCCGGAAgCGAGgCGCCg-- -3'
miRNA:   3'- -GCCGGCCGGUCUUgGCUCaGUGGaua -5'
10937 3' -58.5 NC_002794.1 + 48369 0.67 0.790934
Target:  5'- uCGaGCUGGCCgAGAgcuucACCGAGUUccucgGCCUGg -3'
miRNA:   3'- -GC-CGGCCGG-UCU-----UGGCUCAG-----UGGAUa -5'
10937 3' -58.5 NC_002794.1 + 48807 0.66 0.856749
Target:  5'- gCGGCCGGUCuaAGGACgGAGcCGCg--- -3'
miRNA:   3'- -GCCGGCCGG--UCUUGgCUCaGUGgaua -5'
10937 3' -58.5 NC_002794.1 + 49300 0.69 0.687253
Target:  5'- uCGGCgGGCCcGAGuuCCGAGUcCGCCg-- -3'
miRNA:   3'- -GCCGgCCGGuCUU--GGCUCA-GUGGaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.