miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10937 5' -54.8 NC_002794.1 + 78845 0.66 0.953432
Target:  5'- cCAgGUACCAGccgcgCCACCccGGGuCCGAc -3'
miRNA:   3'- aGUaUAUGGUCa----GGUGGa-CCC-GGCUa -5'
10937 5' -54.8 NC_002794.1 + 14467 0.66 0.953432
Target:  5'- ------gUCAGUUCGCCcGGGCCGGc -3'
miRNA:   3'- aguauauGGUCAGGUGGaCCCGGCUa -5'
10937 5' -54.8 NC_002794.1 + 78773 0.66 0.949331
Target:  5'- gCAgcgGCguGUCCACUUcGGCCGAc -3'
miRNA:   3'- aGUauaUGguCAGGUGGAcCCGGCUa -5'
10937 5' -54.8 NC_002794.1 + 94255 0.66 0.944996
Target:  5'- ---gGUGCCGGcCCGCC-GGGCgGGg -3'
miRNA:   3'- aguaUAUGGUCaGGUGGaCCCGgCUa -5'
10937 5' -54.8 NC_002794.1 + 5855 0.66 0.940426
Target:  5'- cCAUcgGCCcguccgGGUCCAUCgGcGGCCGGUa -3'
miRNA:   3'- aGUAuaUGG------UCAGGUGGaC-CCGGCUA- -5'
10937 5' -54.8 NC_002794.1 + 163278 0.67 0.935618
Target:  5'- gCGgcgGUGCCGGggCCgggGCCgGGGCCGGg -3'
miRNA:   3'- aGUa--UAUGGUCa-GG---UGGaCCCGGCUa -5'
10937 5' -54.8 NC_002794.1 + 111912 0.67 0.925281
Target:  5'- -----cGCCuGGaCCGCCUGGGCCGc- -3'
miRNA:   3'- aguauaUGG-UCaGGUGGACCCGGCua -5'
10937 5' -54.8 NC_002794.1 + 28807 0.67 0.919752
Target:  5'- ---gGUGCCGGUCUugCgUGGGUCGu- -3'
miRNA:   3'- aguaUAUGGUCAGGugG-ACCCGGCua -5'
10937 5' -54.8 NC_002794.1 + 164433 0.67 0.913983
Target:  5'- uUCGUcgACCAGcugcUCCACCUGGaugcgauCCGAc -3'
miRNA:   3'- -AGUAuaUGGUC----AGGUGGACCc------GGCUa -5'
10937 5' -54.8 NC_002794.1 + 81515 0.67 0.913983
Target:  5'- gCAgcgGCUcGUCCGCCgccaGGGCCGGc -3'
miRNA:   3'- aGUauaUGGuCAGGUGGa---CCCGGCUa -5'
10937 5' -54.8 NC_002794.1 + 135863 0.68 0.888542
Target:  5'- -----cGCCAGUUCACC-GGcGCCGAg -3'
miRNA:   3'- aguauaUGGUCAGGUGGaCC-CGGCUa -5'
10937 5' -54.8 NC_002794.1 + 45230 0.68 0.879479
Target:  5'- cUCGUGaGCCAGuaUCCcggcacgcgcgucgACCUGGGCUGGc -3'
miRNA:   3'- -AGUAUaUGGUC--AGG--------------UGGACCCGGCUa -5'
10937 5' -54.8 NC_002794.1 + 115670 0.69 0.859474
Target:  5'- -gGUAUACCGGcuaCGCCUGGGCgGu- -3'
miRNA:   3'- agUAUAUGGUCag-GUGGACCCGgCua -5'
10937 5' -54.8 NC_002794.1 + 182977 0.7 0.791898
Target:  5'- gCcgAUGCCGGaCCACgacccgcucgaCUGGGCCGAg -3'
miRNA:   3'- aGuaUAUGGUCaGGUG-----------GACCCGGCUa -5'
10937 5' -54.8 NC_002794.1 + 161834 0.74 0.602974
Target:  5'- aUCAUcgACCAGagCCGCCUgcugccGGGCCGGc -3'
miRNA:   3'- -AGUAuaUGGUCa-GGUGGA------CCCGGCUa -5'
10937 5' -54.8 NC_002794.1 + 94908 0.81 0.254882
Target:  5'- cCGUGUGCgAGcUCUACCUGGGCCGGc -3'
miRNA:   3'- aGUAUAUGgUC-AGGUGGACCCGGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.