miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10938 3' -50.4 NC_002794.1 + 192516 0.66 0.9984
Target:  5'- -cGGCCu---CCCACGGG-GGGgUGGc -3'
miRNA:   3'- cuUCGGuuauGGGUGUCCaCUUgACC- -5'
10938 3' -50.4 NC_002794.1 + 8916 0.66 0.9984
Target:  5'- --cGCCAcgGCCCcCGGGcc-GCUGGc -3'
miRNA:   3'- cuuCGGUuaUGGGuGUCCacuUGACC- -5'
10938 3' -50.4 NC_002794.1 + 66191 0.66 0.998371
Target:  5'- uAAGUCAGcgcgaucUGCUCGCGGGgu-GCUGGa -3'
miRNA:   3'- cUUCGGUU-------AUGGGUGUCCacuUGACC- -5'
10938 3' -50.4 NC_002794.1 + 127367 0.66 0.997287
Target:  5'- -cGGCCGAgccgGCCgUGCGGGUGAuCUGc -3'
miRNA:   3'- cuUCGGUUa---UGG-GUGUCCACUuGACc -5'
10938 3' -50.4 NC_002794.1 + 135784 0.67 0.996234
Target:  5'- --uGCCGccGCCCgcGCAGGUGcuccacggccAGCUGGc -3'
miRNA:   3'- cuuCGGUuaUGGG--UGUCCAC----------UUGACC- -5'
10938 3' -50.4 NC_002794.1 + 56226 0.67 0.995593
Target:  5'- -uGGCgAA-GCCCAC-GGUGcAGCUGGu -3'
miRNA:   3'- cuUCGgUUaUGGGUGuCCAC-UUGACC- -5'
10938 3' -50.4 NC_002794.1 + 67533 0.67 0.995593
Target:  5'- cGAGCCc--GCCCggACGcGGUGGACUGa -3'
miRNA:   3'- cUUCGGuuaUGGG--UGU-CCACUUGACc -5'
10938 3' -50.4 NC_002794.1 + 34930 0.67 0.993122
Target:  5'- -uGGCgAucgGCCC--AGGUGGACUGGu -3'
miRNA:   3'- cuUCGgUua-UGGGugUCCACUUGACC- -5'
10938 3' -50.4 NC_002794.1 + 189369 0.68 0.986661
Target:  5'- cGAGGCCGAgaugACCCuCGcGGUGGG-UGGa -3'
miRNA:   3'- -CUUCGGUUa---UGGGuGU-CCACUUgACC- -5'
10938 3' -50.4 NC_002794.1 + 8804 0.68 0.986661
Target:  5'- cGGAGCCcgcgGCCCGcCAGGUGccgcaGGCUGc -3'
miRNA:   3'- -CUUCGGuua-UGGGU-GUCCAC-----UUGACc -5'
10938 3' -50.4 NC_002794.1 + 125750 0.69 0.97606
Target:  5'- aGAAGCCGAcgAUCaCGgAGGUGAugaacgcGCUGGu -3'
miRNA:   3'- -CUUCGGUUa-UGG-GUgUCCACU-------UGACC- -5'
10938 3' -50.4 NC_002794.1 + 183353 0.7 0.970846
Target:  5'- cGAGCCGcucgACCgGCggcuGGGUGGAUUGGa -3'
miRNA:   3'- cUUCGGUua--UGGgUG----UCCACUUGACC- -5'
10938 3' -50.4 NC_002794.1 + 17835 0.7 0.964528
Target:  5'- cGggGUCAccGCCCcgauccggcugACGGGUGGagACUGGa -3'
miRNA:   3'- -CuuCGGUuaUGGG-----------UGUCCACU--UGACC- -5'
10938 3' -50.4 NC_002794.1 + 101044 0.7 0.961033
Target:  5'- --cGCUAcUACCgGCGGGUGcugcGGCUGGa -3'
miRNA:   3'- cuuCGGUuAUGGgUGUCCAC----UUGACC- -5'
10938 3' -50.4 NC_002794.1 + 39440 0.72 0.918717
Target:  5'- -cGGCCAcgGCCgGCGGGUGAgagACcGGu -3'
miRNA:   3'- cuUCGGUuaUGGgUGUCCACU---UGaCC- -5'
10938 3' -50.4 NC_002794.1 + 45446 0.76 0.747959
Target:  5'- aGAAGCCGugGCCCGCgAGGcUGGAcCUGGa -3'
miRNA:   3'- -CUUCGGUuaUGGGUG-UCC-ACUU-GACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.