miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10938 5' -58.4 NC_002794.1 + 156073 0.66 0.860337
Target:  5'- uCGCCAuCCCCCCGgGCGccGAcCGUUUUu -3'
miRNA:   3'- -GCGGUuGGGGGGCaCGC--CUaGUAGAA- -5'
10938 5' -58.4 NC_002794.1 + 112500 0.66 0.860337
Target:  5'- gGCCAGCCUCCCGUGUcugcuccaGGGcCcgCa- -3'
miRNA:   3'- gCGGUUGGGGGGCACG--------CCUaGuaGaa -5'
10938 5' -58.4 NC_002794.1 + 182473 0.66 0.83713
Target:  5'- aGCCccuccGCCCCCUc-GCGGAcUCGUCUg -3'
miRNA:   3'- gCGGu----UGGGGGGcaCGCCU-AGUAGAa -5'
10938 5' -58.4 NC_002794.1 + 71883 0.67 0.820764
Target:  5'- aCGUCGACCaCgCCGUgGCGccGGUCAUCUa -3'
miRNA:   3'- -GCGGUUGG-GgGGCA-CGC--CUAGUAGAa -5'
10938 5' -58.4 NC_002794.1 + 130100 0.67 0.820764
Target:  5'- gCGCCGccGCCgCCCGUgguggggccgaGCGGAUCAc--- -3'
miRNA:   3'- -GCGGU--UGGgGGGCA-----------CGCCUAGUagaa -5'
10938 5' -58.4 NC_002794.1 + 9232 0.67 0.812333
Target:  5'- cCGCCAGCCgacacagCCCGcGCGGGUCGg--- -3'
miRNA:   3'- -GCGGUUGGg------GGGCaCGCCUAGUagaa -5'
10938 5' -58.4 NC_002794.1 + 158942 0.67 0.802012
Target:  5'- gCGCCGGCCCCgCGaccGCGGAggagaaaguccgCGUCg- -3'
miRNA:   3'- -GCGGUUGGGGgGCa--CGCCUa-----------GUAGaa -5'
10938 5' -58.4 NC_002794.1 + 76330 0.67 0.786141
Target:  5'- cCGCgGACCCCUCGUccGCGGc-CGUCg- -3'
miRNA:   3'- -GCGgUUGGGGGGCA--CGCCuaGUAGaa -5'
10938 5' -58.4 NC_002794.1 + 182732 0.68 0.730435
Target:  5'- cCGCgCGGCUCgCUCGcGCGGGUCGUCg- -3'
miRNA:   3'- -GCG-GUUGGG-GGGCaCGCCUAGUAGaa -5'
10938 5' -58.4 NC_002794.1 + 191715 0.69 0.71113
Target:  5'- uGCgAGCCCCCCGgacgacgaggGUagGGGUCGUCg- -3'
miRNA:   3'- gCGgUUGGGGGGCa---------CG--CCUAGUAGaa -5'
10938 5' -58.4 NC_002794.1 + 94253 0.69 0.701377
Target:  5'- uGCCGGCCCgCCGgGCGGGggugccguuUCGUCc- -3'
miRNA:   3'- gCGGUUGGGgGGCaCGCCU---------AGUAGaa -5'
10938 5' -58.4 NC_002794.1 + 124082 0.7 0.642985
Target:  5'- gCGCCGucgcgcggcgagucGCCCCCCG-GCGGGcgcggcgaggccgccUCGUCg- -3'
miRNA:   3'- -GCGGU--------------UGGGGGGCaCGCCU---------------AGUAGaa -5'
10938 5' -58.4 NC_002794.1 + 114852 0.7 0.626037
Target:  5'- uCGuCCGACCCCgcaucguccgcacgcUCGUGCGGAUCcUCa- -3'
miRNA:   3'- -GC-GGUUGGGG---------------GGCACGCCUAGuAGaa -5'
10938 5' -58.4 NC_002794.1 + 127366 0.72 0.533449
Target:  5'- gGCCGAgCCggCCGUGCGGGUgAUCUg -3'
miRNA:   3'- gCGGUUgGGg-GGCACGCCUAgUAGAa -5'
10938 5' -58.4 NC_002794.1 + 12584 0.73 0.476892
Target:  5'- aGCCAGCCCaCCGcGCGGAUCGg--- -3'
miRNA:   3'- gCGGUUGGGgGGCaCGCCUAGUagaa -5'
10938 5' -58.4 NC_002794.1 + 93763 0.77 0.300191
Target:  5'- aGCCGccGCCCaCgGUGCGGGUCAUCUa -3'
miRNA:   3'- gCGGU--UGGGgGgCACGCCUAGUAGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.