miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10939 3' -55.4 NC_002794.1 + 114530 0.66 0.96114
Target:  5'- --aGCCGCGGUacgcuccgcCGUCGCCg- -3'
miRNA:   3'- gagCGGCGCCAguuuaa---GCAGCGGgu -5'
10939 3' -55.4 NC_002794.1 + 66346 0.66 0.959743
Target:  5'- -cCGCCGCGGUCGg---CG-CGCUg- -3'
miRNA:   3'- gaGCGGCGCCAGUuuaaGCaGCGGgu -5'
10939 3' -55.4 NC_002794.1 + 126733 0.66 0.959743
Target:  5'- uCUCGCCGCcgaccgccGGcCAAGccgCuUCGCCCAc -3'
miRNA:   3'- -GAGCGGCG--------CCaGUUUaa-GcAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 67690 0.66 0.956101
Target:  5'- -gCGCCGCGGaCGGGUcggugaccUCGUCGgUCGc -3'
miRNA:   3'- gaGCGGCGCCaGUUUA--------AGCAGCgGGU- -5'
10939 3' -55.4 NC_002794.1 + 183671 0.66 0.956101
Target:  5'- -cCGCCGCGGcCGGg--CGcCGCUCGg -3'
miRNA:   3'- gaGCGGCGCCaGUUuaaGCaGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 71663 0.66 0.956101
Target:  5'- uUCGUC-CGGUCGcgguuucgcgccAAUUCG-CGCCCu -3'
miRNA:   3'- gAGCGGcGCCAGU------------UUAAGCaGCGGGu -5'
10939 3' -55.4 NC_002794.1 + 10664 0.66 0.956101
Target:  5'- gUCGgCGCGGUCAucg-CGgcUCGCgCCGc -3'
miRNA:   3'- gAGCgGCGCCAGUuuaaGC--AGCG-GGU- -5'
10939 3' -55.4 NC_002794.1 + 1880 0.66 0.956101
Target:  5'- -cCGCCGCGGcCGcuacCGcCGCCCc -3'
miRNA:   3'- gaGCGGCGCCaGUuuaaGCaGCGGGu -5'
10939 3' -55.4 NC_002794.1 + 179352 0.66 0.956101
Target:  5'- -cCGCCGCcGUCcccggCGUCGCCa- -3'
miRNA:   3'- gaGCGGCGcCAGuuuaaGCAGCGGgu -5'
10939 3' -55.4 NC_002794.1 + 1463 0.66 0.956101
Target:  5'- -gCGCCGCccGGUCG--UUCG-CGUCCGc -3'
miRNA:   3'- gaGCGGCG--CCAGUuuAAGCaGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 96806 0.66 0.952241
Target:  5'- cCUCGUCGUGGcCG---UCGUCGUCa- -3'
miRNA:   3'- -GAGCGGCGCCaGUuuaAGCAGCGGgu -5'
10939 3' -55.4 NC_002794.1 + 146346 0.66 0.952241
Target:  5'- gCUCGCCG-GGUaCAugGGUUCGcgCGCCgCGa -3'
miRNA:   3'- -GAGCGGCgCCA-GU--UUAAGCa-GCGG-GU- -5'
10939 3' -55.4 NC_002794.1 + 158626 0.66 0.952241
Target:  5'- cCUCGCCGaucaGGUCG---UCGaCGCUCu -3'
miRNA:   3'- -GAGCGGCg---CCAGUuuaAGCaGCGGGu -5'
10939 3' -55.4 NC_002794.1 + 182736 0.66 0.952241
Target:  5'- gUCGCCGCGcGgcucgcucgcgCGGG-UCGUCGCCg- -3'
miRNA:   3'- gAGCGGCGC-Ca----------GUUUaAGCAGCGGgu -5'
10939 3' -55.4 NC_002794.1 + 59141 0.66 0.949818
Target:  5'- -gCGCCggucccggcguccagGCGGUCGAgGUUCGUCuCCCc -3'
miRNA:   3'- gaGCGG---------------CGCCAGUU-UAAGCAGcGGGu -5'
10939 3' -55.4 NC_002794.1 + 11800 0.66 0.948159
Target:  5'- --gGCCGCGG-CGAAg-CGgcacgCGCCCAc -3'
miRNA:   3'- gagCGGCGCCaGUUUaaGCa----GCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 179163 0.66 0.948159
Target:  5'- uCUCGCuCGCGaGUCGc--UCGcCGUCCGa -3'
miRNA:   3'- -GAGCG-GCGC-CAGUuuaAGCaGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 54173 0.66 0.948159
Target:  5'- gUCGCCguacGCGGUCccg-UCGUgGCCgAa -3'
miRNA:   3'- gAGCGG----CGCCAGuuuaAGCAgCGGgU- -5'
10939 3' -55.4 NC_002794.1 + 49582 0.66 0.948159
Target:  5'- gUCGUCGUcGUCGAccucgUCGUCGCgCAg -3'
miRNA:   3'- gAGCGGCGcCAGUUua---AGCAGCGgGU- -5'
10939 3' -55.4 NC_002794.1 + 105579 0.66 0.945602
Target:  5'- -gCGCgCGCGGUCGAgcucgccgacguuccGUuggcUCGUCGCgCAc -3'
miRNA:   3'- gaGCG-GCGCCAGUU---------------UA----AGCAGCGgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.