miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10939 3' -55.4 NC_002794.1 + 79267 0.78 0.410759
Target:  5'- --aGCuCGUGGUCAGGUgcguggggaucUCGUCGCCCAg -3'
miRNA:   3'- gagCG-GCGCCAGUUUA-----------AGCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 6011 0.76 0.510533
Target:  5'- uCUCgGCCGCGGagccgUCGGcgUCGUCGCCg- -3'
miRNA:   3'- -GAG-CGGCGCC-----AGUUuaAGCAGCGGgu -5'
10939 3' -55.4 NC_002794.1 + 71582 0.75 0.529792
Target:  5'- -cCGCCGCGccGUCcg--UCGUCGCCCGc -3'
miRNA:   3'- gaGCGGCGC--CAGuuuaAGCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 52365 0.75 0.569048
Target:  5'- gCUgGCCGCGGggcugCAGAUgaggaagcgcaCGUCGCCCGc -3'
miRNA:   3'- -GAgCGGCGCCa----GUUUAa----------GCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 56838 0.74 0.611996
Target:  5'- gCUCGCCGCGG-CGAAacuggccgaacuucuUgaggaagUCGUUGCCCAg -3'
miRNA:   3'- -GAGCGGCGCCaGUUU---------------A-------AGCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 5797 0.74 0.619027
Target:  5'- gUCGCCGCGGUgGAacaccagggcGUucUCGUCGCgCAg -3'
miRNA:   3'- gAGCGGCGCCAgUU----------UA--AGCAGCGgGU- -5'
10939 3' -55.4 NC_002794.1 + 132362 0.74 0.62908
Target:  5'- -aCGCCGCGG-CG---UCGUCGUCCGc -3'
miRNA:   3'- gaGCGGCGCCaGUuuaAGCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 64306 0.73 0.639135
Target:  5'- cCUCGcCCGUGGUCGGcg-CGgCGCCCGu -3'
miRNA:   3'- -GAGC-GGCGCCAGUUuaaGCaGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 18403 0.73 0.639135
Target:  5'- aCUCGUCGCGGUCAcggUCccaccCGCCCGc -3'
miRNA:   3'- -GAGCGGCGCCAGUuuaAGca---GCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 146380 0.73 0.649184
Target:  5'- -cCGCCGCGGgucugUCGAccUCGUCGCCg- -3'
miRNA:   3'- gaGCGGCGCC-----AGUUuaAGCAGCGGgu -5'
10939 3' -55.4 NC_002794.1 + 153432 0.73 0.649184
Target:  5'- --aGCgUGCGGUUGAAcUCGUCGCCCu -3'
miRNA:   3'- gagCG-GCGCCAGUUUaAGCAGCGGGu -5'
10939 3' -55.4 NC_002794.1 + 163053 0.73 0.65922
Target:  5'- uUCGCCGCGaccGUCGucUUCGUCGgCCu -3'
miRNA:   3'- gAGCGGCGC---CAGUuuAAGCAGCgGGu -5'
10939 3' -55.4 NC_002794.1 + 129838 0.73 0.669236
Target:  5'- --gGCCGCGGUCGucgccgUCGUCGUCgGg -3'
miRNA:   3'- gagCGGCGCCAGUuua---AGCAGCGGgU- -5'
10939 3' -55.4 NC_002794.1 + 12655 0.72 0.708923
Target:  5'- -aCGCCgGCGG-CGcGUUCGUCGCCa- -3'
miRNA:   3'- gaGCGG-CGCCaGUuUAAGCAGCGGgu -5'
10939 3' -55.4 NC_002794.1 + 113478 0.72 0.718709
Target:  5'- -cCGCCGCGG-CGGAccgCGgCGCCCAc -3'
miRNA:   3'- gaGCGGCGCCaGUUUaa-GCaGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 66402 0.72 0.718709
Target:  5'- gUCGUgaacgguccaGCGGUCGggcAGUUUGUCGCCCGa -3'
miRNA:   3'- gAGCGg---------CGCCAGU---UUAAGCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 80265 0.72 0.728424
Target:  5'- --gGCUGCGGUCGAcc-CGcUCGCCCGg -3'
miRNA:   3'- gagCGGCGCCAGUUuaaGC-AGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 165451 0.72 0.728424
Target:  5'- -aUGCCGUGGUCGAA--CGUCGUgCAg -3'
miRNA:   3'- gaGCGGCGCCAGUUUaaGCAGCGgGU- -5'
10939 3' -55.4 NC_002794.1 + 156189 0.72 0.728424
Target:  5'- cCUCuGCCGCGcGgugCGcuucUUCGUCGCCCGg -3'
miRNA:   3'- -GAG-CGGCGC-Ca--GUuu--AAGCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 4164 0.71 0.75705
Target:  5'- cCUCGUCGCGGacCAccuccUCGUCGUCCGa -3'
miRNA:   3'- -GAGCGGCGCCa-GUuua--AGCAGCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.