miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10939 3' -55.4 NC_002794.1 + 51811 0.71 0.766392
Target:  5'- cCUgGCCGCcGUCGAcUUC-UCGCCCGa -3'
miRNA:   3'- -GAgCGGCGcCAGUUuAAGcAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 146845 0.71 0.784719
Target:  5'- -gCGCCGCGG-CGGccgcggCGUCGUCCGg -3'
miRNA:   3'- gaGCGGCGCCaGUUuaa---GCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 79776 0.7 0.793688
Target:  5'- gCUCGgCGCGG-CGG--UCGUCGCCgGg -3'
miRNA:   3'- -GAGCgGCGCCaGUUuaAGCAGCGGgU- -5'
10939 3' -55.4 NC_002794.1 + 145148 0.7 0.802517
Target:  5'- uUCGCCGCc-UCGcGUUCGcCGCCCGg -3'
miRNA:   3'- gAGCGGCGccAGUuUAAGCaGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 126939 0.7 0.811197
Target:  5'- gCUCGCgGC-GUCc---UCGUCGCCCGc -3'
miRNA:   3'- -GAGCGgCGcCAGuuuaAGCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 12858 0.7 0.814626
Target:  5'- uUCGCCGCGGgcgccccgCGcgCGCCCGc -3'
miRNA:   3'- gAGCGGCGCCaguuuaa-GCa-GCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 99097 0.7 0.81972
Target:  5'- --gGCCgGCGGUCGA----GUCGCCCGg -3'
miRNA:   3'- gagCGG-CGCCAGUUuaagCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 156913 0.7 0.828079
Target:  5'- -aCGCCG-GG-CAGA-UCGUCGCCUAc -3'
miRNA:   3'- gaGCGGCgCCaGUUUaAGCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 122943 0.69 0.844273
Target:  5'- gCUCGCCGCcgccGUCGGAgccggCGUccgcgCGCCCAc -3'
miRNA:   3'- -GAGCGGCGc---CAGUUUaa---GCA-----GCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 142359 0.69 0.852094
Target:  5'- gCUCGCCGUGG--------GUCGCCCAg -3'
miRNA:   3'- -GAGCGGCGCCaguuuaagCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 64485 0.69 0.859723
Target:  5'- uUCGcCCGUGGUCGGcgcCG-CGCCCGu -3'
miRNA:   3'- gAGC-GGCGCCAGUUuaaGCaGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 7432 0.69 0.859723
Target:  5'- -cUGCCGCaGGUCc---UCGUCGuCCCAc -3'
miRNA:   3'- gaGCGGCG-CCAGuuuaAGCAGC-GGGU- -5'
10939 3' -55.4 NC_002794.1 + 5337 0.69 0.874381
Target:  5'- --aGCCGCGuGcCGA--UCGUCGUCCAc -3'
miRNA:   3'- gagCGGCGC-CaGUUuaAGCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 115456 0.69 0.874381
Target:  5'- aCUCGCCGCGGccCAGGUgg--CGCCgGg -3'
miRNA:   3'- -GAGCGGCGCCa-GUUUAagcaGCGGgU- -5'
10939 3' -55.4 NC_002794.1 + 183291 0.68 0.881398
Target:  5'- aUCGCCaCGGUCuucccGUUCGgCGCCUg -3'
miRNA:   3'- gAGCGGcGCCAGuu---UAAGCaGCGGGu -5'
10939 3' -55.4 NC_002794.1 + 4701 0.68 0.881398
Target:  5'- cCUCGUCGUaccacggcgaGGUCAucgUCGcgcUCGCCCGg -3'
miRNA:   3'- -GAGCGGCG----------CCAGUuuaAGC---AGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 155279 0.68 0.888202
Target:  5'- cCUgGCCGCGGgcccucuccucCGAG-UCGUCGCCg- -3'
miRNA:   3'- -GAgCGGCGCCa----------GUUUaAGCAGCGGgu -5'
10939 3' -55.4 NC_002794.1 + 71480 0.68 0.888202
Target:  5'- uUCGCCuCGGUCGcggcggcgCGUCGCCg- -3'
miRNA:   3'- gAGCGGcGCCAGUuuaa----GCAGCGGgu -5'
10939 3' -55.4 NC_002794.1 + 121143 0.68 0.888202
Target:  5'- aUCaCCGUGGUCAAGaacaucaCGUCGaCCCAa -3'
miRNA:   3'- gAGcGGCGCCAGUUUaa-----GCAGC-GGGU- -5'
10939 3' -55.4 NC_002794.1 + 84210 0.68 0.89736
Target:  5'- -gCGCCGCGGccgcggccacgcccgUCGGAUaCGgUCGUCCAg -3'
miRNA:   3'- gaGCGGCGCC---------------AGUUUAaGC-AGCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.