miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10939 3' -55.4 NC_002794.1 + 178361 0.66 0.943852
Target:  5'- aUCGCCGacgcCGGcCGAGaUCGgCGCCCu -3'
miRNA:   3'- gAGCGGC----GCCaGUUUaAGCaGCGGGu -5'
10939 3' -55.4 NC_002794.1 + 144687 0.67 0.94116
Target:  5'- cCUCGaCGCGGccguucgccgaucguUCucGUUCGcUCGCCCGc -3'
miRNA:   3'- -GAGCgGCGCC---------------AGuuUAAGC-AGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 57378 0.67 0.939319
Target:  5'- uCUCGUCgGCGGUCccggcgGGGUUCauGUCGCCg- -3'
miRNA:   3'- -GAGCGG-CGCCAG------UUUAAG--CAGCGGgu -5'
10939 3' -55.4 NC_002794.1 + 14952 0.67 0.939319
Target:  5'- aCUCgGCCGCGGUCucgc-CGgCGCCg- -3'
miRNA:   3'- -GAG-CGGCGCCAGuuuaaGCaGCGGgu -5'
10939 3' -55.4 NC_002794.1 + 184072 0.67 0.937915
Target:  5'- aUCGCCGCGGUguccguggcgccgcCGccgcCGUCGCCg- -3'
miRNA:   3'- gAGCGGCGCCA--------------GUuuaaGCAGCGGgu -5'
10939 3' -55.4 NC_002794.1 + 71435 0.67 0.937442
Target:  5'- -cCGCCGCGGUCucucucccgCG-CGUCCu -3'
miRNA:   3'- gaGCGGCGCCAGuuuaa----GCaGCGGGu -5'
10939 3' -55.4 NC_002794.1 + 48028 0.67 0.936489
Target:  5'- cCUUGCCgGUGGUCGAgccGUugugcauccugggcgUCGUCGCgCAg -3'
miRNA:   3'- -GAGCGG-CGCCAGUU---UA---------------AGCAGCGgGU- -5'
10939 3' -55.4 NC_002794.1 + 82246 0.67 0.934557
Target:  5'- -gCGCCGCGGcCAGGUUcagguugaaCGUCucgagcagcgGCCCGg -3'
miRNA:   3'- gaGCGGCGCCaGUUUAA---------GCAG----------CGGGU- -5'
10939 3' -55.4 NC_002794.1 + 58254 0.67 0.934557
Target:  5'- -cCGCCgGCGGUCGcgg-CGgcggUGCCCAc -3'
miRNA:   3'- gaGCGG-CGCCAGUuuaaGCa---GCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 89021 0.67 0.933083
Target:  5'- gCUCgGCCuGCGGcuccgccuacaacaUCGAGcUCGUCGCCUu -3'
miRNA:   3'- -GAG-CGG-CGCC--------------AGUUUaAGCAGCGGGu -5'
10939 3' -55.4 NC_002794.1 + 71546 0.67 0.929565
Target:  5'- gCUCGCC-CGGUCGA--UCGacccgCGaCCCAc -3'
miRNA:   3'- -GAGCGGcGCCAGUUuaAGCa----GC-GGGU- -5'
10939 3' -55.4 NC_002794.1 + 89890 0.67 0.929565
Target:  5'- -cCGCCGCGGaCGAGUUUccgGUCGCg-- -3'
miRNA:   3'- gaGCGGCGCCaGUUUAAG---CAGCGggu -5'
10939 3' -55.4 NC_002794.1 + 90204 0.67 0.929565
Target:  5'- uCUCGCCGCGG-Cg----CGcucCGCCCGg -3'
miRNA:   3'- -GAGCGGCGCCaGuuuaaGCa--GCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 179271 0.67 0.924341
Target:  5'- -cCGCCGCcGUCuccggCGUCGCCa- -3'
miRNA:   3'- gaGCGGCGcCAGuuuaaGCAGCGGgu -5'
10939 3' -55.4 NC_002794.1 + 182284 0.67 0.924341
Target:  5'- -aCGCUGuCGGUCAAcggcacgacCGUCGUCCGg -3'
miRNA:   3'- gaGCGGC-GCCAGUUuaa------GCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 9550 0.67 0.918888
Target:  5'- gUCGCCGCGG-CGcgcUCGUCcUCCAa -3'
miRNA:   3'- gAGCGGCGCCaGUuuaAGCAGcGGGU- -5'
10939 3' -55.4 NC_002794.1 + 52170 0.68 0.913204
Target:  5'- -cUGCCGCagGGUCg----CGUUGCCCAc -3'
miRNA:   3'- gaGCGGCG--CCAGuuuaaGCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 85178 0.68 0.913204
Target:  5'- -aCGCUGUGG------UCGUCGCCCGa -3'
miRNA:   3'- gaGCGGCGCCaguuuaAGCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 141334 0.68 0.913204
Target:  5'- gUCGUCGagaucaugcaGGggAAAUUCGUCGUCCAg -3'
miRNA:   3'- gAGCGGCg---------CCagUUUAAGCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 8268 0.68 0.910866
Target:  5'- --gGCCGCcGUCGcgacgcccggCGUCGCCCAg -3'
miRNA:   3'- gagCGGCGcCAGUuuaa------GCAGCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.