Results 41 - 60 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10939 | 3' | -55.4 | NC_002794.1 | + | 90136 | 0.68 | 0.901151 |
Target: 5'- aUCGCgGCGGccgUCGGGaaagcgUCGUCGCCg- -3' miRNA: 3'- gAGCGgCGCC---AGUUUa-----AGCAGCGGgu -5' |
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10939 | 3' | -55.4 | NC_002794.1 | + | 20431 | 0.68 | 0.901151 |
Target: 5'- -aUGCCGCGGcgCAGAcgaUCGUCGUCg- -3' miRNA: 3'- gaGCGGCGCCa-GUUUa--AGCAGCGGgu -5' |
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10939 | 3' | -55.4 | NC_002794.1 | + | 83863 | 0.68 | 0.901151 |
Target: 5'- -aCGCCcugcGCGGUCAccagUCGgcgcCGCCCGa -3' miRNA: 3'- gaGCGG----CGCCAGUuua-AGCa---GCGGGU- -5' |
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10939 | 3' | -55.4 | NC_002794.1 | + | 84210 | 0.68 | 0.89736 |
Target: 5'- -gCGCCGCGGccgcggccacgcccgUCGGAUaCGgUCGUCCAg -3' miRNA: 3'- gaGCGGCGCC---------------AGUUUAaGC-AGCGGGU- -5' |
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10939 | 3' | -55.4 | NC_002794.1 | + | 121143 | 0.68 | 0.888202 |
Target: 5'- aUCaCCGUGGUCAAGaacaucaCGUCGaCCCAa -3' miRNA: 3'- gAGcGGCGCCAGUUUaa-----GCAGC-GGGU- -5' |
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10939 | 3' | -55.4 | NC_002794.1 | + | 155279 | 0.68 | 0.888202 |
Target: 5'- cCUgGCCGCGGgcccucuccucCGAG-UCGUCGCCg- -3' miRNA: 3'- -GAgCGGCGCCa----------GUUUaAGCAGCGGgu -5' |
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10939 | 3' | -55.4 | NC_002794.1 | + | 71480 | 0.68 | 0.888202 |
Target: 5'- uUCGCCuCGGUCGcggcggcgCGUCGCCg- -3' miRNA: 3'- gAGCGGcGCCAGUuuaa----GCAGCGGgu -5' |
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10939 | 3' | -55.4 | NC_002794.1 | + | 4701 | 0.68 | 0.881398 |
Target: 5'- cCUCGUCGUaccacggcgaGGUCAucgUCGcgcUCGCCCGg -3' miRNA: 3'- -GAGCGGCG----------CCAGUuuaAGC---AGCGGGU- -5' |
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10939 | 3' | -55.4 | NC_002794.1 | + | 183291 | 0.68 | 0.881398 |
Target: 5'- aUCGCCaCGGUCuucccGUUCGgCGCCUg -3' miRNA: 3'- gAGCGGcGCCAGuu---UAAGCaGCGGGu -5' |
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10939 | 3' | -55.4 | NC_002794.1 | + | 5337 | 0.69 | 0.874381 |
Target: 5'- --aGCCGCGuGcCGA--UCGUCGUCCAc -3' miRNA: 3'- gagCGGCGC-CaGUUuaAGCAGCGGGU- -5' |
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10939 | 3' | -55.4 | NC_002794.1 | + | 115456 | 0.69 | 0.874381 |
Target: 5'- aCUCGCCGCGGccCAGGUgg--CGCCgGg -3' miRNA: 3'- -GAGCGGCGCCa-GUUUAagcaGCGGgU- -5' |
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10939 | 3' | -55.4 | NC_002794.1 | + | 64485 | 0.69 | 0.859723 |
Target: 5'- uUCGcCCGUGGUCGGcgcCG-CGCCCGu -3' miRNA: 3'- gAGC-GGCGCCAGUUuaaGCaGCGGGU- -5' |
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10939 | 3' | -55.4 | NC_002794.1 | + | 7432 | 0.69 | 0.859723 |
Target: 5'- -cUGCCGCaGGUCc---UCGUCGuCCCAc -3' miRNA: 3'- gaGCGGCG-CCAGuuuaAGCAGC-GGGU- -5' |
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10939 | 3' | -55.4 | NC_002794.1 | + | 142359 | 0.69 | 0.852094 |
Target: 5'- gCUCGCCGUGG--------GUCGCCCAg -3' miRNA: 3'- -GAGCGGCGCCaguuuaagCAGCGGGU- -5' |
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10939 | 3' | -55.4 | NC_002794.1 | + | 122943 | 0.69 | 0.844273 |
Target: 5'- gCUCGCCGCcgccGUCGGAgccggCGUccgcgCGCCCAc -3' miRNA: 3'- -GAGCGGCGc---CAGUUUaa---GCA-----GCGGGU- -5' |
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10939 | 3' | -55.4 | NC_002794.1 | + | 156913 | 0.7 | 0.828079 |
Target: 5'- -aCGCCG-GG-CAGA-UCGUCGCCUAc -3' miRNA: 3'- gaGCGGCgCCaGUUUaAGCAGCGGGU- -5' |
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10939 | 3' | -55.4 | NC_002794.1 | + | 99097 | 0.7 | 0.81972 |
Target: 5'- --gGCCgGCGGUCGA----GUCGCCCGg -3' miRNA: 3'- gagCGG-CGCCAGUUuaagCAGCGGGU- -5' |
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10939 | 3' | -55.4 | NC_002794.1 | + | 12858 | 0.7 | 0.814626 |
Target: 5'- uUCGCCGCGGgcgccccgCGcgCGCCCGc -3' miRNA: 3'- gAGCGGCGCCaguuuaa-GCa-GCGGGU- -5' |
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10939 | 3' | -55.4 | NC_002794.1 | + | 126939 | 0.7 | 0.811197 |
Target: 5'- gCUCGCgGC-GUCc---UCGUCGCCCGc -3' miRNA: 3'- -GAGCGgCGcCAGuuuaAGCAGCGGGU- -5' |
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10939 | 3' | -55.4 | NC_002794.1 | + | 145148 | 0.7 | 0.802517 |
Target: 5'- uUCGCCGCc-UCGcGUUCGcCGCCCGg -3' miRNA: 3'- gAGCGGCGccAGUuUAAGCaGCGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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