miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10939 3' -55.4 NC_002794.1 + 1463 0.66 0.956101
Target:  5'- -gCGCCGCccGGUCG--UUCG-CGUCCGc -3'
miRNA:   3'- gaGCGGCG--CCAGUuuAAGCaGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 1880 0.66 0.956101
Target:  5'- -cCGCCGCGGcCGcuacCGcCGCCCc -3'
miRNA:   3'- gaGCGGCGCCaGUuuaaGCaGCGGGu -5'
10939 3' -55.4 NC_002794.1 + 4164 0.71 0.75705
Target:  5'- cCUCGUCGCGGacCAccuccUCGUCGUCCGa -3'
miRNA:   3'- -GAGCGGCGCCa-GUuua--AGCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 4701 0.68 0.881398
Target:  5'- cCUCGUCGUaccacggcgaGGUCAucgUCGcgcUCGCCCGg -3'
miRNA:   3'- -GAGCGGCG----------CCAGUuuaAGC---AGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 5337 0.69 0.874381
Target:  5'- --aGCCGCGuGcCGA--UCGUCGUCCAc -3'
miRNA:   3'- gagCGGCGC-CaGUUuaAGCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 5797 0.74 0.619027
Target:  5'- gUCGCCGCGGUgGAacaccagggcGUucUCGUCGCgCAg -3'
miRNA:   3'- gAGCGGCGCCAgUU----------UA--AGCAGCGgGU- -5'
10939 3' -55.4 NC_002794.1 + 6011 0.76 0.510533
Target:  5'- uCUCgGCCGCGGagccgUCGGcgUCGUCGCCg- -3'
miRNA:   3'- -GAG-CGGCGCC-----AGUUuaAGCAGCGGgu -5'
10939 3' -55.4 NC_002794.1 + 7432 0.69 0.859723
Target:  5'- -cUGCCGCaGGUCc---UCGUCGuCCCAc -3'
miRNA:   3'- gaGCGGCG-CCAGuuuaAGCAGC-GGGU- -5'
10939 3' -55.4 NC_002794.1 + 8268 0.68 0.910866
Target:  5'- --gGCCGCcGUCGcgacgcccggCGUCGCCCAg -3'
miRNA:   3'- gagCGGCGcCAGUuuaa------GCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 9550 0.67 0.918888
Target:  5'- gUCGCCGCGG-CGcgcUCGUCcUCCAa -3'
miRNA:   3'- gAGCGGCGCCaGUuuaAGCAGcGGGU- -5'
10939 3' -55.4 NC_002794.1 + 10664 0.66 0.956101
Target:  5'- gUCGgCGCGGUCAucg-CGgcUCGCgCCGc -3'
miRNA:   3'- gAGCgGCGCCAGUuuaaGC--AGCG-GGU- -5'
10939 3' -55.4 NC_002794.1 + 11800 0.66 0.948159
Target:  5'- --gGCCGCGG-CGAAg-CGgcacgCGCCCAc -3'
miRNA:   3'- gagCGGCGCCaGUUUaaGCa----GCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 12655 0.72 0.708923
Target:  5'- -aCGCCgGCGG-CGcGUUCGUCGCCa- -3'
miRNA:   3'- gaGCGG-CGCCaGUuUAAGCAGCGGgu -5'
10939 3' -55.4 NC_002794.1 + 12858 0.7 0.814626
Target:  5'- uUCGCCGCGGgcgccccgCGcgCGCCCGc -3'
miRNA:   3'- gAGCGGCGCCaguuuaa-GCa-GCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 14952 0.67 0.939319
Target:  5'- aCUCgGCCGCGGUCucgc-CGgCGCCg- -3'
miRNA:   3'- -GAG-CGGCGCCAGuuuaaGCaGCGGgu -5'
10939 3' -55.4 NC_002794.1 + 18403 0.73 0.639135
Target:  5'- aCUCGUCGCGGUCAcggUCccaccCGCCCGc -3'
miRNA:   3'- -GAGCGGCGCCAGUuuaAGca---GCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 20431 0.68 0.901151
Target:  5'- -aUGCCGCGGcgCAGAcgaUCGUCGUCg- -3'
miRNA:   3'- gaGCGGCGCCa-GUUUa--AGCAGCGGgu -5'
10939 3' -55.4 NC_002794.1 + 48028 0.67 0.936489
Target:  5'- cCUUGCCgGUGGUCGAgccGUugugcauccugggcgUCGUCGCgCAg -3'
miRNA:   3'- -GAGCGG-CGCCAGUU---UA---------------AGCAGCGgGU- -5'
10939 3' -55.4 NC_002794.1 + 49582 0.66 0.948159
Target:  5'- gUCGUCGUcGUCGAccucgUCGUCGCgCAg -3'
miRNA:   3'- gAGCGGCGcCAGUUua---AGCAGCGgGU- -5'
10939 3' -55.4 NC_002794.1 + 51811 0.71 0.766392
Target:  5'- cCUgGCCGCcGUCGAcUUC-UCGCCCGa -3'
miRNA:   3'- -GAgCGGCGcCAGUUuAAGcAGCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.