miRNA display CGI


Results 21 - 40 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10939 3' -55.4 NC_002794.1 + 52170 0.68 0.913204
Target:  5'- -cUGCCGCagGGUCg----CGUUGCCCAc -3'
miRNA:   3'- gaGCGGCG--CCAGuuuaaGCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 52365 0.75 0.569048
Target:  5'- gCUgGCCGCGGggcugCAGAUgaggaagcgcaCGUCGCCCGc -3'
miRNA:   3'- -GAgCGGCGCCa----GUUUAa----------GCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 54173 0.66 0.948159
Target:  5'- gUCGCCguacGCGGUCccg-UCGUgGCCgAa -3'
miRNA:   3'- gAGCGG----CGCCAGuuuaAGCAgCGGgU- -5'
10939 3' -55.4 NC_002794.1 + 56838 0.74 0.611996
Target:  5'- gCUCGCCGCGG-CGAAacuggccgaacuucuUgaggaagUCGUUGCCCAg -3'
miRNA:   3'- -GAGCGGCGCCaGUUU---------------A-------AGCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 57378 0.67 0.939319
Target:  5'- uCUCGUCgGCGGUCccggcgGGGUUCauGUCGCCg- -3'
miRNA:   3'- -GAGCGG-CGCCAG------UUUAAG--CAGCGGgu -5'
10939 3' -55.4 NC_002794.1 + 58254 0.67 0.934557
Target:  5'- -cCGCCgGCGGUCGcgg-CGgcggUGCCCAc -3'
miRNA:   3'- gaGCGG-CGCCAGUuuaaGCa---GCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 59141 0.66 0.949818
Target:  5'- -gCGCCggucccggcguccagGCGGUCGAgGUUCGUCuCCCc -3'
miRNA:   3'- gaGCGG---------------CGCCAGUU-UAAGCAGcGGGu -5'
10939 3' -55.4 NC_002794.1 + 64306 0.73 0.639135
Target:  5'- cCUCGcCCGUGGUCGGcg-CGgCGCCCGu -3'
miRNA:   3'- -GAGC-GGCGCCAGUUuaaGCaGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 64485 0.69 0.859723
Target:  5'- uUCGcCCGUGGUCGGcgcCG-CGCCCGu -3'
miRNA:   3'- gAGC-GGCGCCAGUUuaaGCaGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 66346 0.66 0.959743
Target:  5'- -cCGCCGCGGUCGg---CG-CGCUg- -3'
miRNA:   3'- gaGCGGCGCCAGUuuaaGCaGCGGgu -5'
10939 3' -55.4 NC_002794.1 + 66402 0.72 0.718709
Target:  5'- gUCGUgaacgguccaGCGGUCGggcAGUUUGUCGCCCGa -3'
miRNA:   3'- gAGCGg---------CGCCAGU---UUAAGCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 67690 0.66 0.956101
Target:  5'- -gCGCCGCGGaCGGGUcggugaccUCGUCGgUCGc -3'
miRNA:   3'- gaGCGGCGCCaGUUUA--------AGCAGCgGGU- -5'
10939 3' -55.4 NC_002794.1 + 71435 0.67 0.937442
Target:  5'- -cCGCCGCGGUCucucucccgCG-CGUCCu -3'
miRNA:   3'- gaGCGGCGCCAGuuuaa----GCaGCGGGu -5'
10939 3' -55.4 NC_002794.1 + 71480 0.68 0.888202
Target:  5'- uUCGCCuCGGUCGcggcggcgCGUCGCCg- -3'
miRNA:   3'- gAGCGGcGCCAGUuuaa----GCAGCGGgu -5'
10939 3' -55.4 NC_002794.1 + 71546 0.67 0.929565
Target:  5'- gCUCGCC-CGGUCGA--UCGacccgCGaCCCAc -3'
miRNA:   3'- -GAGCGGcGCCAGUUuaAGCa----GC-GGGU- -5'
10939 3' -55.4 NC_002794.1 + 71582 0.75 0.529792
Target:  5'- -cCGCCGCGccGUCcg--UCGUCGCCCGc -3'
miRNA:   3'- gaGCGGCGC--CAGuuuaAGCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 71663 0.66 0.956101
Target:  5'- uUCGUC-CGGUCGcgguuucgcgccAAUUCG-CGCCCu -3'
miRNA:   3'- gAGCGGcGCCAGU------------UUAAGCaGCGGGu -5'
10939 3' -55.4 NC_002794.1 + 79267 0.78 0.410759
Target:  5'- --aGCuCGUGGUCAGGUgcguggggaucUCGUCGCCCAg -3'
miRNA:   3'- gagCG-GCGCCAGUUUA-----------AGCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 79776 0.7 0.793688
Target:  5'- gCUCGgCGCGG-CGG--UCGUCGCCgGg -3'
miRNA:   3'- -GAGCgGCGCCaGUUuaAGCAGCGGgU- -5'
10939 3' -55.4 NC_002794.1 + 80265 0.72 0.728424
Target:  5'- --gGCUGCGGUCGAcc-CGcUCGCCCGg -3'
miRNA:   3'- gagCGGCGCCAGUUuaaGC-AGCGGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.