miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10939 3' -55.4 NC_002794.1 + 184072 0.67 0.937915
Target:  5'- aUCGCCGCGGUguccguggcgccgcCGccgcCGUCGCCg- -3'
miRNA:   3'- gAGCGGCGCCA--------------GUuuaaGCAGCGGgu -5'
10939 3' -55.4 NC_002794.1 + 183671 0.66 0.956101
Target:  5'- -cCGCCGCGGcCGGg--CGcCGCUCGg -3'
miRNA:   3'- gaGCGGCGCCaGUUuaaGCaGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 183291 0.68 0.881398
Target:  5'- aUCGCCaCGGUCuucccGUUCGgCGCCUg -3'
miRNA:   3'- gAGCGGcGCCAGuu---UAAGCaGCGGGu -5'
10939 3' -55.4 NC_002794.1 + 182736 0.66 0.952241
Target:  5'- gUCGCCGCGcGgcucgcucgcgCGGG-UCGUCGCCg- -3'
miRNA:   3'- gAGCGGCGC-Ca----------GUUUaAGCAGCGGgu -5'
10939 3' -55.4 NC_002794.1 + 182284 0.67 0.924341
Target:  5'- -aCGCUGuCGGUCAAcggcacgacCGUCGUCCGg -3'
miRNA:   3'- gaGCGGC-GCCAGUUuaa------GCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 179352 0.66 0.956101
Target:  5'- -cCGCCGCcGUCcccggCGUCGCCa- -3'
miRNA:   3'- gaGCGGCGcCAGuuuaaGCAGCGGgu -5'
10939 3' -55.4 NC_002794.1 + 179271 0.67 0.924341
Target:  5'- -cCGCCGCcGUCuccggCGUCGCCa- -3'
miRNA:   3'- gaGCGGCGcCAGuuuaaGCAGCGGgu -5'
10939 3' -55.4 NC_002794.1 + 179163 0.66 0.948159
Target:  5'- uCUCGCuCGCGaGUCGc--UCGcCGUCCGa -3'
miRNA:   3'- -GAGCG-GCGC-CAGUuuaAGCaGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 178361 0.66 0.943852
Target:  5'- aUCGCCGacgcCGGcCGAGaUCGgCGCCCu -3'
miRNA:   3'- gAGCGGC----GCCaGUUUaAGCaGCGGGu -5'
10939 3' -55.4 NC_002794.1 + 165451 0.72 0.728424
Target:  5'- -aUGCCGUGGUCGAA--CGUCGUgCAg -3'
miRNA:   3'- gaGCGGCGCCAGUUUaaGCAGCGgGU- -5'
10939 3' -55.4 NC_002794.1 + 163053 0.73 0.65922
Target:  5'- uUCGCCGCGaccGUCGucUUCGUCGgCCu -3'
miRNA:   3'- gAGCGGCGC---CAGUuuAAGCAGCgGGu -5'
10939 3' -55.4 NC_002794.1 + 158626 0.66 0.952241
Target:  5'- cCUCGCCGaucaGGUCG---UCGaCGCUCu -3'
miRNA:   3'- -GAGCGGCg---CCAGUuuaAGCaGCGGGu -5'
10939 3' -55.4 NC_002794.1 + 156913 0.7 0.828079
Target:  5'- -aCGCCG-GG-CAGA-UCGUCGCCUAc -3'
miRNA:   3'- gaGCGGCgCCaGUUUaAGCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 156189 0.72 0.728424
Target:  5'- cCUCuGCCGCGcGgugCGcuucUUCGUCGCCCGg -3'
miRNA:   3'- -GAG-CGGCGC-Ca--GUuu--AAGCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 155279 0.68 0.888202
Target:  5'- cCUgGCCGCGGgcccucuccucCGAG-UCGUCGCCg- -3'
miRNA:   3'- -GAgCGGCGCCa----------GUUUaAGCAGCGGgu -5'
10939 3' -55.4 NC_002794.1 + 153432 0.73 0.649184
Target:  5'- --aGCgUGCGGUUGAAcUCGUCGCCCu -3'
miRNA:   3'- gagCG-GCGCCAGUUUaAGCAGCGGGu -5'
10939 3' -55.4 NC_002794.1 + 146845 0.71 0.784719
Target:  5'- -gCGCCGCGG-CGGccgcggCGUCGUCCGg -3'
miRNA:   3'- gaGCGGCGCCaGUUuaa---GCAGCGGGU- -5'
10939 3' -55.4 NC_002794.1 + 146380 0.73 0.649184
Target:  5'- -cCGCCGCGGgucugUCGAccUCGUCGCCg- -3'
miRNA:   3'- gaGCGGCGCC-----AGUUuaAGCAGCGGgu -5'
10939 3' -55.4 NC_002794.1 + 146346 0.66 0.952241
Target:  5'- gCUCGCCG-GGUaCAugGGUUCGcgCGCCgCGa -3'
miRNA:   3'- -GAGCGGCgCCA-GU--UUAAGCa-GCGG-GU- -5'
10939 3' -55.4 NC_002794.1 + 145148 0.7 0.802517
Target:  5'- uUCGCCGCc-UCGcGUUCGcCGCCCGg -3'
miRNA:   3'- gAGCGGCGccAGUuUAAGCaGCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.