Results 1 - 20 of 83 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10939 | 3' | -55.4 | NC_002794.1 | + | 79267 | 0.78 | 0.410759 |
Target: 5'- --aGCuCGUGGUCAGGUgcguggggaucUCGUCGCCCAg -3' miRNA: 3'- gagCG-GCGCCAGUUUA-----------AGCAGCGGGU- -5' |
|||||||
10939 | 3' | -55.4 | NC_002794.1 | + | 146346 | 0.66 | 0.952241 |
Target: 5'- gCUCGCCG-GGUaCAugGGUUCGcgCGCCgCGa -3' miRNA: 3'- -GAGCGGCgCCA-GU--UUAAGCa-GCGG-GU- -5' |
|||||||
10939 | 3' | -55.4 | NC_002794.1 | + | 96806 | 0.66 | 0.952241 |
Target: 5'- cCUCGUCGUGGcCG---UCGUCGUCa- -3' miRNA: 3'- -GAGCGGCGCCaGUuuaAGCAGCGGgu -5' |
|||||||
10939 | 3' | -55.4 | NC_002794.1 | + | 59141 | 0.66 | 0.949818 |
Target: 5'- -gCGCCggucccggcguccagGCGGUCGAgGUUCGUCuCCCc -3' miRNA: 3'- gaGCGG---------------CGCCAGUU-UAAGCAGcGGGu -5' |
|||||||
10939 | 3' | -55.4 | NC_002794.1 | + | 11800 | 0.66 | 0.948159 |
Target: 5'- --gGCCGCGG-CGAAg-CGgcacgCGCCCAc -3' miRNA: 3'- gagCGGCGCCaGUUUaaGCa----GCGGGU- -5' |
|||||||
10939 | 3' | -55.4 | NC_002794.1 | + | 179163 | 0.66 | 0.948159 |
Target: 5'- uCUCGCuCGCGaGUCGc--UCGcCGUCCGa -3' miRNA: 3'- -GAGCG-GCGC-CAGUuuaAGCaGCGGGU- -5' |
|||||||
10939 | 3' | -55.4 | NC_002794.1 | + | 54173 | 0.66 | 0.948159 |
Target: 5'- gUCGCCguacGCGGUCccg-UCGUgGCCgAa -3' miRNA: 3'- gAGCGG----CGCCAGuuuaAGCAgCGGgU- -5' |
|||||||
10939 | 3' | -55.4 | NC_002794.1 | + | 49582 | 0.66 | 0.948159 |
Target: 5'- gUCGUCGUcGUCGAccucgUCGUCGCgCAg -3' miRNA: 3'- gAGCGGCGcCAGUUua---AGCAGCGgGU- -5' |
|||||||
10939 | 3' | -55.4 | NC_002794.1 | + | 178361 | 0.66 | 0.943852 |
Target: 5'- aUCGCCGacgcCGGcCGAGaUCGgCGCCCu -3' miRNA: 3'- gAGCGGC----GCCaGUUUaAGCaGCGGGu -5' |
|||||||
10939 | 3' | -55.4 | NC_002794.1 | + | 158626 | 0.66 | 0.952241 |
Target: 5'- cCUCGCCGaucaGGUCG---UCGaCGCUCu -3' miRNA: 3'- -GAGCGGCg---CCAGUuuaAGCaGCGGGu -5' |
|||||||
10939 | 3' | -55.4 | NC_002794.1 | + | 182736 | 0.66 | 0.952241 |
Target: 5'- gUCGCCGCGcGgcucgcucgcgCGGG-UCGUCGCCg- -3' miRNA: 3'- gAGCGGCGC-Ca----------GUUUaAGCAGCGGgu -5' |
|||||||
10939 | 3' | -55.4 | NC_002794.1 | + | 67690 | 0.66 | 0.956101 |
Target: 5'- -gCGCCGCGGaCGGGUcggugaccUCGUCGgUCGc -3' miRNA: 3'- gaGCGGCGCCaGUUUA--------AGCAGCgGGU- -5' |
|||||||
10939 | 3' | -55.4 | NC_002794.1 | + | 114530 | 0.66 | 0.96114 |
Target: 5'- --aGCCGCGGUacgcuccgcCGUCGCCg- -3' miRNA: 3'- gagCGGCGCCAguuuaa---GCAGCGGgu -5' |
|||||||
10939 | 3' | -55.4 | NC_002794.1 | + | 126733 | 0.66 | 0.959743 |
Target: 5'- uCUCGCCGCcgaccgccGGcCAAGccgCuUCGCCCAc -3' miRNA: 3'- -GAGCGGCG--------CCaGUUUaa-GcAGCGGGU- -5' |
|||||||
10939 | 3' | -55.4 | NC_002794.1 | + | 1463 | 0.66 | 0.956101 |
Target: 5'- -gCGCCGCccGGUCG--UUCG-CGUCCGc -3' miRNA: 3'- gaGCGGCG--CCAGUuuAAGCaGCGGGU- -5' |
|||||||
10939 | 3' | -55.4 | NC_002794.1 | + | 179352 | 0.66 | 0.956101 |
Target: 5'- -cCGCCGCcGUCcccggCGUCGCCa- -3' miRNA: 3'- gaGCGGCGcCAGuuuaaGCAGCGGgu -5' |
|||||||
10939 | 3' | -55.4 | NC_002794.1 | + | 1880 | 0.66 | 0.956101 |
Target: 5'- -cCGCCGCGGcCGcuacCGcCGCCCc -3' miRNA: 3'- gaGCGGCGCCaGUuuaaGCaGCGGGu -5' |
|||||||
10939 | 3' | -55.4 | NC_002794.1 | + | 10664 | 0.66 | 0.956101 |
Target: 5'- gUCGgCGCGGUCAucg-CGgcUCGCgCCGc -3' miRNA: 3'- gAGCgGCGCCAGUuuaaGC--AGCG-GGU- -5' |
|||||||
10939 | 3' | -55.4 | NC_002794.1 | + | 71663 | 0.66 | 0.956101 |
Target: 5'- uUCGUC-CGGUCGcgguuucgcgccAAUUCG-CGCCCu -3' miRNA: 3'- gAGCGGcGCCAGU------------UUAAGCaGCGGGu -5' |
|||||||
10939 | 3' | -55.4 | NC_002794.1 | + | 183671 | 0.66 | 0.956101 |
Target: 5'- -cCGCCGCGGcCGGg--CGcCGCUCGg -3' miRNA: 3'- gaGCGGCGCCaGUUuaaGCaGCGGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home