miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10939 5' -53.1 NC_002794.1 + 8908 0.66 0.988706
Target:  5'- cCCCCGGGcCGcuGGCcgCCGCCuccAGCAg -3'
miRNA:   3'- -GGGGUUCuGC--UUGuaGGUGGuc-UCGU- -5'
10939 5' -53.1 NC_002794.1 + 24508 0.66 0.988706
Target:  5'- gUCCGAgguGACGAAucgguuguCAUCCGCCugaaugucgAGAGCAa -3'
miRNA:   3'- gGGGUU---CUGCUU--------GUAGGUGG---------UCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 162586 0.66 0.987228
Target:  5'- gCCUAcGACGAGgAggaCCACCAGgAGUAu -3'
miRNA:   3'- gGGGUuCUGCUUgUa--GGUGGUC-UCGU- -5'
10939 5' -53.1 NC_002794.1 + 155530 0.66 0.987228
Target:  5'- aCCCGccgcGCGGACGcgCCACCGGcGGCGc -3'
miRNA:   3'- gGGGUuc--UGCUUGUa-GGUGGUC-UCGU- -5'
10939 5' -53.1 NC_002794.1 + 144498 0.66 0.987228
Target:  5'- gCCCGAGGCGGccgcccCGUCCgGCCGGcgacaGGCGc -3'
miRNA:   3'- gGGGUUCUGCUu-----GUAGG-UGGUC-----UCGU- -5'
10939 5' -53.1 NC_002794.1 + 125686 0.66 0.987228
Target:  5'- gCCCAGGuacCGAugGUaCCACaugguGGAGCGg -3'
miRNA:   3'- gGGGUUCu--GCUugUA-GGUGg----UCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 161855 0.66 0.986756
Target:  5'- aUCCAAGACcugacgccguccauCAUCgACCAGAGCc -3'
miRNA:   3'- gGGGUUCUGcuu-----------GUAGgUGGUCUCGu -5'
10939 5' -53.1 NC_002794.1 + 65834 0.66 0.986271
Target:  5'- gCCUCGcgcGAgGAGCGUCCgucaucgucgccgucACCGGAGCc -3'
miRNA:   3'- -GGGGUu--CUgCUUGUAGG---------------UGGUCUCGu -5'
10939 5' -53.1 NC_002794.1 + 44026 0.66 0.985604
Target:  5'- cCCCCGAcgccguucGGCGAgGCGUUCAUCGGcGCGc -3'
miRNA:   3'- -GGGGUU--------CUGCU-UGUAGGUGGUCuCGU- -5'
10939 5' -53.1 NC_002794.1 + 9650 0.66 0.985261
Target:  5'- gCCCCAGGGCaGAugGCGguccgggucccgCCACCAGuGUc -3'
miRNA:   3'- -GGGGUUCUG-CU--UGUa-----------GGUGGUCuCGu -5'
10939 5' -53.1 NC_002794.1 + 146081 0.66 0.983827
Target:  5'- cCCCgGAGGCGGuuggGCAcgagCCgaGCCAgGAGCAg -3'
miRNA:   3'- -GGGgUUCUGCU----UGUa---GG--UGGU-CUCGU- -5'
10939 5' -53.1 NC_002794.1 + 115446 0.66 0.983827
Target:  5'- gCCCAGGugGcgccgggcggGGCcgCCGCCGGcGGCc -3'
miRNA:   3'- gGGGUUCugC----------UUGuaGGUGGUC-UCGu -5'
10939 5' -53.1 NC_002794.1 + 147390 0.66 0.983827
Target:  5'- aCgUCAGGGCGAAg--CCGCCGG-GCAg -3'
miRNA:   3'- -GgGGUUCUGCUUguaGGUGGUCuCGU- -5'
10939 5' -53.1 NC_002794.1 + 79467 0.66 0.983263
Target:  5'- gUCgAAGACGAagguguggcggggcGCGagCACCAGGGCGc -3'
miRNA:   3'- gGGgUUCUGCU--------------UGUagGUGGUCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 49875 0.66 0.981889
Target:  5'- gCCCAGaGCgcccaGAACggCCGCCGGGGCc -3'
miRNA:   3'- gGGGUUcUG-----CUUGuaGGUGGUCUCGu -5'
10939 5' -53.1 NC_002794.1 + 51046 0.66 0.981889
Target:  5'- uUCCGGGcguccgugcacGCGGACGagCCGCUGGAGCGg -3'
miRNA:   3'- gGGGUUC-----------UGCUUGUa-GGUGGUCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 185683 0.66 0.981686
Target:  5'- aCCCGAGAccuagacCGGGCAagUCCGCUAGAcCGg -3'
miRNA:   3'- gGGGUUCU-------GCUUGU--AGGUGGUCUcGU- -5'
10939 5' -53.1 NC_002794.1 + 182765 0.67 0.979782
Target:  5'- gUCCCGggGGACGAgguGCGUUCGgCGGGGUc -3'
miRNA:   3'- -GGGGU--UCUGCU---UGUAGGUgGUCUCGu -5'
10939 5' -53.1 NC_002794.1 + 148377 0.67 0.979782
Target:  5'- gCCCGGGGuCGAGC-UUCACCAGcuGCc -3'
miRNA:   3'- gGGGUUCU-GCUUGuAGGUGGUCu-CGu -5'
10939 5' -53.1 NC_002794.1 + 143893 0.67 0.978433
Target:  5'- cCUCCGGGACcGGCAUCguggcgcucggccgcUACCgAGAGCAg -3'
miRNA:   3'- -GGGGUUCUGcUUGUAG---------------GUGG-UCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.