Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10939 | 5' | -53.1 | NC_002794.1 | + | 8908 | 0.66 | 0.988706 |
Target: 5'- cCCCCGGGcCGcuGGCcgCCGCCuccAGCAg -3' miRNA: 3'- -GGGGUUCuGC--UUGuaGGUGGuc-UCGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 185683 | 0.66 | 0.981686 |
Target: 5'- aCCCGAGAccuagacCGGGCAagUCCGCUAGAcCGg -3' miRNA: 3'- gGGGUUCU-------GCUUGU--AGGUGGUCUcGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 51046 | 0.66 | 0.981889 |
Target: 5'- uUCCGGGcguccgugcacGCGGACGagCCGCUGGAGCGg -3' miRNA: 3'- gGGGUUC-----------UGCUUGUa-GGUGGUCUCGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 49875 | 0.66 | 0.981889 |
Target: 5'- gCCCAGaGCgcccaGAACggCCGCCGGGGCc -3' miRNA: 3'- gGGGUUcUG-----CUUGuaGGUGGUCUCGu -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 79467 | 0.66 | 0.983263 |
Target: 5'- gUCgAAGACGAagguguggcggggcGCGagCACCAGGGCGc -3' miRNA: 3'- gGGgUUCUGCU--------------UGUagGUGGUCUCGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 146081 | 0.66 | 0.983827 |
Target: 5'- cCCCgGAGGCGGuuggGCAcgagCCgaGCCAgGAGCAg -3' miRNA: 3'- -GGGgUUCUGCU----UGUa---GG--UGGU-CUCGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 115446 | 0.66 | 0.983827 |
Target: 5'- gCCCAGGugGcgccgggcggGGCcgCCGCCGGcGGCc -3' miRNA: 3'- gGGGUUCugC----------UUGuaGGUGGUC-UCGu -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 147390 | 0.66 | 0.983827 |
Target: 5'- aCgUCAGGGCGAAg--CCGCCGG-GCAg -3' miRNA: 3'- -GgGGUUCUGCUUguaGGUGGUCuCGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 9650 | 0.66 | 0.985261 |
Target: 5'- gCCCCAGGGCaGAugGCGguccgggucccgCCACCAGuGUc -3' miRNA: 3'- -GGGGUUCUG-CU--UGUa-----------GGUGGUCuCGu -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 161855 | 0.66 | 0.986756 |
Target: 5'- aUCCAAGACcugacgccguccauCAUCgACCAGAGCc -3' miRNA: 3'- gGGGUUCUGcuu-----------GUAGgUGGUCUCGu -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 24508 | 0.66 | 0.988706 |
Target: 5'- gUCCGAgguGACGAAucgguuguCAUCCGCCugaaugucgAGAGCAa -3' miRNA: 3'- gGGGUU---CUGCUU--------GUAGGUGG---------UCUCGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 125686 | 0.66 | 0.987228 |
Target: 5'- gCCCAGGuacCGAugGUaCCACaugguGGAGCGg -3' miRNA: 3'- gGGGUUCu--GCUugUA-GGUGg----UCUCGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 144498 | 0.66 | 0.987228 |
Target: 5'- gCCCGAGGCGGccgcccCGUCCgGCCGGcgacaGGCGc -3' miRNA: 3'- gGGGUUCUGCUu-----GUAGG-UGGUC-----UCGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 155530 | 0.66 | 0.987228 |
Target: 5'- aCCCGccgcGCGGACGcgCCACCGGcGGCGc -3' miRNA: 3'- gGGGUuc--UGCUUGUa-GGUGGUC-UCGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 162586 | 0.66 | 0.987228 |
Target: 5'- gCCUAcGACGAGgAggaCCACCAGgAGUAu -3' miRNA: 3'- gGGGUuCUGCUUgUa--GGUGGUC-UCGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 44026 | 0.66 | 0.985604 |
Target: 5'- cCCCCGAcgccguucGGCGAgGCGUUCAUCGGcGCGc -3' miRNA: 3'- -GGGGUU--------CUGCU-UGUAGGUGGUCuCGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 65834 | 0.66 | 0.986271 |
Target: 5'- gCCUCGcgcGAgGAGCGUCCgucaucgucgccgucACCGGAGCc -3' miRNA: 3'- -GGGGUu--CUgCUUGUAGG---------------UGGUCUCGu -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 148377 | 0.67 | 0.979782 |
Target: 5'- gCCCGGGGuCGAGC-UUCACCAGcuGCc -3' miRNA: 3'- gGGGUUCU-GCUUGuAGGUGGUCu-CGu -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 143893 | 0.67 | 0.978433 |
Target: 5'- cCUCCGGGACcGGCAUCguggcgcucggccgcUACCgAGAGCAg -3' miRNA: 3'- -GGGGUUCUGcUUGUAG---------------GUGG-UCUCGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 36289 | 0.67 | 0.977497 |
Target: 5'- -gCCAuucauuguuGGCGGGCgggGUCCACCAGGGUu -3' miRNA: 3'- ggGGUu--------CUGCUUG---UAGGUGGUCUCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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