miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10939 5' -53.1 NC_002794.1 + 45057 0.77 0.560112
Target:  5'- gCCCCGcGGCGGACGgccgagCCGCUGGAGCu -3'
miRNA:   3'- -GGGGUuCUGCUUGUa-----GGUGGUCUCGu -5'
10939 5' -53.1 NC_002794.1 + 50097 0.76 0.610862
Target:  5'- aCCCCGAG-CGAGCG-CCACgCGGAGUc -3'
miRNA:   3'- -GGGGUUCuGCUUGUaGGUG-GUCUCGu -5'
10939 5' -53.1 NC_002794.1 + 158328 0.76 0.621088
Target:  5'- gUCCCGgcuGGCGAACAgCCGCCGGAGgGg -3'
miRNA:   3'- -GGGGUu--CUGCUUGUaGGUGGUCUCgU- -5'
10939 5' -53.1 NC_002794.1 + 125145 0.75 0.692457
Target:  5'- aCCCAcuGCGAACGcucUCCGCCaccaGGAGCAg -3'
miRNA:   3'- gGGGUucUGCUUGU---AGGUGG----UCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 124529 0.74 0.70252
Target:  5'- aCCUCGGcGGCGAuguCGUCCGCCAG-GCGg -3'
miRNA:   3'- -GGGGUU-CUGCUu--GUAGGUGGUCuCGU- -5'
10939 5' -53.1 NC_002794.1 + 142191 0.74 0.751767
Target:  5'- gCUCCAGGACGGAucCGUCCGucaaaCGGAGCGc -3'
miRNA:   3'- -GGGGUUCUGCUU--GUAGGUg----GUCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 66932 0.73 0.770793
Target:  5'- uCgCCGAcGACGAACGUCCGgUGGAGCc -3'
miRNA:   3'- -GgGGUU-CUGCUUGUAGGUgGUCUCGu -5'
10939 5' -53.1 NC_002794.1 + 74389 0.73 0.79568
Target:  5'- aCCgUCGAGACGAccgccgguucggacGCGgccUCCGCCGGGGCGa -3'
miRNA:   3'- -GG-GGUUCUGCU--------------UGU---AGGUGGUCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 193569 0.72 0.816037
Target:  5'- -gCCGGGGCGugucAUAUCCACCucccAGAGCAa -3'
miRNA:   3'- ggGGUUCUGCu---UGUAGGUGG----UCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 92011 0.72 0.824619
Target:  5'- aCCaCCGAG-CGGGCcgCCGCCgacgAGAGCGa -3'
miRNA:   3'- -GG-GGUUCuGCUUGuaGGUGG----UCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 127116 0.72 0.833025
Target:  5'- aCCCCGGaggccGACuGAGCcgggCCGCCGGGGCGc -3'
miRNA:   3'- -GGGGUU-----CUG-CUUGua--GGUGGUCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 112814 0.72 0.840434
Target:  5'- aCCCAcggcggaGGACGAGCGcCCACCcacGGGCGc -3'
miRNA:   3'- gGGGU-------UCUGCUUGUaGGUGGu--CUCGU- -5'
10939 5' -53.1 NC_002794.1 + 67395 0.71 0.857118
Target:  5'- gCCCAGGACGAcCggUCACCGGGucGCGg -3'
miRNA:   3'- gGGGUUCUGCUuGuaGGUGGUCU--CGU- -5'
10939 5' -53.1 NC_002794.1 + 175431 0.71 0.863997
Target:  5'- aCCCCGcgccggaGGACGuGCA-CCGCUGGAGCc -3'
miRNA:   3'- -GGGGU-------UCUGCuUGUaGGUGGUCUCGu -5'
10939 5' -53.1 NC_002794.1 + 50070 0.71 0.864751
Target:  5'- uCCCCGgccggcucGGACGAcgacGCcgCCGCCGGcGGCGa -3'
miRNA:   3'- -GGGGU--------UCUGCU----UGuaGGUGGUC-UCGU- -5'
10939 5' -53.1 NC_002794.1 + 14892 0.71 0.879383
Target:  5'- aCUCCGucgGGGCGAACAacUCCGagaCGGAGCu -3'
miRNA:   3'- -GGGGU---UCUGCUUGU--AGGUg--GUCUCGu -5'
10939 5' -53.1 NC_002794.1 + 45825 0.7 0.892468
Target:  5'- gCCgCCGAGugGAGCcgCUACCGacugcggugggacGAGCGc -3'
miRNA:   3'- -GG-GGUUCugCUUGuaGGUGGU-------------CUCGU- -5'
10939 5' -53.1 NC_002794.1 + 130556 0.7 0.893134
Target:  5'- uCCUCGAGACGAcaGCAccaacUCCGCCuGGcGCGa -3'
miRNA:   3'- -GGGGUUCUGCU--UGU-----AGGUGGuCU-CGU- -5'
10939 5' -53.1 NC_002794.1 + 56471 0.7 0.893134
Target:  5'- gCCCAAGACGGGC-UUgACCAGGucguGCGc -3'
miRNA:   3'- gGGGUUCUGCUUGuAGgUGGUCU----CGU- -5'
10939 5' -53.1 NC_002794.1 + 97405 0.7 0.899669
Target:  5'- gUUCGAGACGAGCGUCgACgggacggaAGAGCAg -3'
miRNA:   3'- gGGGUUCUGCUUGUAGgUGg-------UCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.