miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10939 5' -53.1 NC_002794.1 + 108514 0.7 0.905971
Target:  5'- uCCCCAGcagcggguccggcGGCGAGCGgcguucugggcggcgCgGCCAGAGCGa -3'
miRNA:   3'- -GGGGUU-------------CUGCUUGUa--------------GgUGGUCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 133901 0.7 0.912039
Target:  5'- cCCCCGAGGCcAGCggCCGCCugcuGCAg -3'
miRNA:   3'- -GGGGUUCUGcUUGuaGGUGGucu-CGU- -5'
10939 5' -53.1 NC_002794.1 + 50312 0.7 0.9144
Target:  5'- gCCCCGAGcggcccgaccgguucGCGGACGagCGCCgacGGAGCGg -3'
miRNA:   3'- -GGGGUUC---------------UGCUUGUagGUGG---UCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 79985 0.69 0.923463
Target:  5'- gUCCGGGGCGuccggGGCGUCCG-CGGAGCGc -3'
miRNA:   3'- gGGGUUCUGC-----UUGUAGGUgGUCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 85073 0.69 0.928816
Target:  5'- gCUCCAGGACGuu-GUCCgACCAGGuGCGc -3'
miRNA:   3'- -GGGGUUCUGCuugUAGG-UGGUCU-CGU- -5'
10939 5' -53.1 NC_002794.1 + 193714 0.69 0.93833
Target:  5'- gUCCGAGACGAcCGUCgGCCuuauacggcaaccGGGGCGu -3'
miRNA:   3'- gGGGUUCUGCUuGUAGgUGG-------------UCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 84035 0.69 0.938807
Target:  5'- gUCCCAgaAGGCgcgGAACGUCUGCCcgAGAGCc -3'
miRNA:   3'- -GGGGU--UCUG---CUUGUAGGUGG--UCUCGu -5'
10939 5' -53.1 NC_002794.1 + 8372 0.69 0.938807
Target:  5'- gCCgAGGACGAggccgcGCAggCgGCCAGGGCGc -3'
miRNA:   3'- gGGgUUCUGCU------UGUa-GgUGGUCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 42810 0.69 0.938807
Target:  5'- uCCCUcGGGCGGACgGUCC-CC-GAGCGa -3'
miRNA:   3'- -GGGGuUCUGCUUG-UAGGuGGuCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 143250 0.69 0.942992
Target:  5'- gCCCGAGACGcccgcccGACcgCCGCCgcgucgaacgGGAGCc -3'
miRNA:   3'- gGGGUUCUGC-------UUGuaGGUGG----------UCUCGu -5'
10939 5' -53.1 NC_002794.1 + 136777 0.69 0.943445
Target:  5'- aCCCugcuGGugGAGCucuUCUACCGcGAGCc -3'
miRNA:   3'- gGGGu---UCugCUUGu--AGGUGGU-CUCGu -5'
10939 5' -53.1 NC_002794.1 + 149834 0.69 0.943445
Target:  5'- uCUCUAuuAGACGAAaacgAUCCcCCGGAGCGg -3'
miRNA:   3'- -GGGGU--UCUGCUUg---UAGGuGGUCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 145128 0.69 0.943896
Target:  5'- gCCCGGGGCGGccgccucgacucgcuCGUCCGCCccGGGCGg -3'
miRNA:   3'- gGGGUUCUGCUu--------------GUAGGUGGu-CUCGU- -5'
10939 5' -53.1 NC_002794.1 + 193786 0.68 0.947418
Target:  5'- gUCCGAGACGAccgccggccuuauACggCgACCGGGGCGu -3'
miRNA:   3'- gGGGUUCUGCU-------------UGuaGgUGGUCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 177693 0.68 0.952018
Target:  5'- aCCCCucuacauGACGuuCAUCCGCCAccGCGa -3'
miRNA:   3'- -GGGGuu-----CUGCuuGUAGGUGGUcuCGU- -5'
10939 5' -53.1 NC_002794.1 + 15526 0.68 0.952018
Target:  5'- gCCCAGGAugaucaCGAGCAUcgCCACgCAGAGg- -3'
miRNA:   3'- gGGGUUCU------GCUUGUA--GGUG-GUCUCgu -5'
10939 5' -53.1 NC_002794.1 + 138640 0.68 0.953622
Target:  5'- aCCgCCAGagccuGACGcgcgugcagcgcgccAACAUCCugCAGAGCu -3'
miRNA:   3'- -GG-GGUU-----CUGC---------------UUGUAGGugGUCUCGu -5'
10939 5' -53.1 NC_002794.1 + 146597 0.68 0.963166
Target:  5'- aCCCAcGACGGGCGcUCCaacgGCCcGGGCGc -3'
miRNA:   3'- gGGGUuCUGCUUGU-AGG----UGGuCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 52141 0.68 0.963166
Target:  5'- gCCCC--GGCGGGCGUcguccucgcCCGCCGGAcGCGc -3'
miRNA:   3'- -GGGGuuCUGCUUGUA---------GGUGGUCU-CGU- -5'
10939 5' -53.1 NC_002794.1 + 189035 0.67 0.966442
Target:  5'- aCCCAGGACGAAgAgaaccccgggCCGgCCGGAGa- -3'
miRNA:   3'- gGGGUUCUGCUUgUa---------GGU-GGUCUCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.