miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10939 5' -53.1 NC_002794.1 + 36289 0.67 0.977497
Target:  5'- -gCCAuucauuguuGGCGGGCgggGUCCACCAGGGUu -3'
miRNA:   3'- ggGGUu--------CUGCUUG---UAGGUGGUCUCGu -5'
10939 5' -53.1 NC_002794.1 + 44280 0.67 0.975028
Target:  5'- cCCCCGGcGGCGcgcGCcgCCGCCGcGGGCc -3'
miRNA:   3'- -GGGGUU-CUGCu--UGuaGGUGGU-CUCGu -5'
10939 5' -53.1 NC_002794.1 + 121717 0.67 0.975028
Target:  5'- cUCCCuGGuCGAcaGCAUCCACCAcGaAGCc -3'
miRNA:   3'- -GGGGuUCuGCU--UGUAGGUGGU-C-UCGu -5'
10939 5' -53.1 NC_002794.1 + 52037 0.67 0.97425
Target:  5'- uUCCCAuGGCGAGCGgccgguccgacgccUCCGgCCAG-GCGa -3'
miRNA:   3'- -GGGGUuCUGCUUGU--------------AGGU-GGUCuCGU- -5'
10939 5' -53.1 NC_002794.1 + 52712 0.67 0.972367
Target:  5'- uCCCCGcggaAGuacGCGGugAagCGCCAGAGCu -3'
miRNA:   3'- -GGGGU----UC---UGCUugUagGUGGUCUCGu -5'
10939 5' -53.1 NC_002794.1 + 81930 0.67 0.972367
Target:  5'- gCCgCCGAGGCGAcggGCcgCUGCCGG-GCu -3'
miRNA:   3'- -GG-GGUUCUGCU---UGuaGGUGGUCuCGu -5'
10939 5' -53.1 NC_002794.1 + 180693 0.67 0.972367
Target:  5'- aCCgCAGGAgGGcCGUUCGCCGGAGa- -3'
miRNA:   3'- -GGgGUUCUgCUuGUAGGUGGUCUCgu -5'
10939 5' -53.1 NC_002794.1 + 47751 0.67 0.970675
Target:  5'- gCUCAAGAagcgacggucgguguCGGGCGcggggCCGCCGGGGCGa -3'
miRNA:   3'- gGGGUUCU---------------GCUUGUa----GGUGGUCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 153830 0.67 0.969507
Target:  5'- uCCCCGAGAUGGug-UUCAUgCGGAGCGc -3'
miRNA:   3'- -GGGGUUCUGCUuguAGGUG-GUCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 93237 0.67 0.969507
Target:  5'- gCCgCAccuGGCGGuCAUCCGCCGGcuGGCGg -3'
miRNA:   3'- -GGgGUu--CUGCUuGUAGGUGGUC--UCGU- -5'
10939 5' -53.1 NC_002794.1 + 110306 0.67 0.96921
Target:  5'- gCCCCGGGACGGcuuccugccacgcGCGaCCAaUCGGGGCc -3'
miRNA:   3'- -GGGGUUCUGCU-------------UGUaGGU-GGUCUCGu -5'
10939 5' -53.1 NC_002794.1 + 189035 0.67 0.966442
Target:  5'- aCCCAGGACGAAgAgaaccccgggCCGgCCGGAGa- -3'
miRNA:   3'- gGGGUUCUGCUUgUa---------GGU-GGUCUCgu -5'
10939 5' -53.1 NC_002794.1 + 185202 0.67 0.966442
Target:  5'- gCCC--GACGAGCGUcuggagCCGCCuGAGCu -3'
miRNA:   3'- gGGGuuCUGCUUGUA------GGUGGuCUCGu -5'
10939 5' -53.1 NC_002794.1 + 109766 0.67 0.966442
Target:  5'- gCCgCCGGGACGGAUGcUCCgGCCcGAGCc -3'
miRNA:   3'- -GG-GGUUCUGCUUGU-AGG-UGGuCUCGu -5'
10939 5' -53.1 NC_002794.1 + 45658 0.67 0.966442
Target:  5'- gCCUCAcGACGAGCGgcugCUGCC-GAGCu -3'
miRNA:   3'- -GGGGUuCUGCUUGUa---GGUGGuCUCGu -5'
10939 5' -53.1 NC_002794.1 + 170654 0.67 0.966442
Target:  5'- aCCCCAAGAgauCGAucacacaacACAcgCCACCAgccGAGCc -3'
miRNA:   3'- -GGGGUUCU---GCU---------UGUa-GGUGGU---CUCGu -5'
10939 5' -53.1 NC_002794.1 + 4384 0.67 0.966442
Target:  5'- aCCCAgcggcagccacGGGCGAuCGUCCGCCAccGAGa- -3'
miRNA:   3'- gGGGU-----------UCUGCUuGUAGGUGGU--CUCgu -5'
10939 5' -53.1 NC_002794.1 + 146597 0.68 0.963166
Target:  5'- aCCCAcGACGGGCGcUCCaacgGCCcGGGCGc -3'
miRNA:   3'- gGGGUuCUGCUUGU-AGG----UGGuCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 52141 0.68 0.963166
Target:  5'- gCCCC--GGCGGGCGUcguccucgcCCGCCGGAcGCGc -3'
miRNA:   3'- -GGGGuuCUGCUUGUA---------GGUGGUCU-CGU- -5'
10939 5' -53.1 NC_002794.1 + 138640 0.68 0.953622
Target:  5'- aCCgCCAGagccuGACGcgcgugcagcgcgccAACAUCCugCAGAGCu -3'
miRNA:   3'- -GG-GGUU-----CUGC---------------UUGUAGGugGUCUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.