Results 41 - 60 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10939 | 5' | -53.1 | NC_002794.1 | + | 15526 | 0.68 | 0.952018 |
Target: 5'- gCCCAGGAugaucaCGAGCAUcgCCACgCAGAGg- -3' miRNA: 3'- gGGGUUCU------GCUUGUA--GGUG-GUCUCgu -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 177693 | 0.68 | 0.952018 |
Target: 5'- aCCCCucuacauGACGuuCAUCCGCCAccGCGa -3' miRNA: 3'- -GGGGuu-----CUGCuuGUAGGUGGUcuCGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 193786 | 0.68 | 0.947418 |
Target: 5'- gUCCGAGACGAccgccggccuuauACggCgACCGGGGCGu -3' miRNA: 3'- gGGGUUCUGCU-------------UGuaGgUGGUCUCGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 145128 | 0.69 | 0.943896 |
Target: 5'- gCCCGGGGCGGccgccucgacucgcuCGUCCGCCccGGGCGg -3' miRNA: 3'- gGGGUUCUGCUu--------------GUAGGUGGu-CUCGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 136777 | 0.69 | 0.943445 |
Target: 5'- aCCCugcuGGugGAGCucuUCUACCGcGAGCc -3' miRNA: 3'- gGGGu---UCugCUUGu--AGGUGGU-CUCGu -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 149834 | 0.69 | 0.943445 |
Target: 5'- uCUCUAuuAGACGAAaacgAUCCcCCGGAGCGg -3' miRNA: 3'- -GGGGU--UCUGCUUg---UAGGuGGUCUCGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 143250 | 0.69 | 0.942992 |
Target: 5'- gCCCGAGACGcccgcccGACcgCCGCCgcgucgaacgGGAGCc -3' miRNA: 3'- gGGGUUCUGC-------UUGuaGGUGG----------UCUCGu -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 8372 | 0.69 | 0.938807 |
Target: 5'- gCCgAGGACGAggccgcGCAggCgGCCAGGGCGc -3' miRNA: 3'- gGGgUUCUGCU------UGUa-GgUGGUCUCGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 42810 | 0.69 | 0.938807 |
Target: 5'- uCCCUcGGGCGGACgGUCC-CC-GAGCGa -3' miRNA: 3'- -GGGGuUCUGCUUG-UAGGuGGuCUCGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 84035 | 0.69 | 0.938807 |
Target: 5'- gUCCCAgaAGGCgcgGAACGUCUGCCcgAGAGCc -3' miRNA: 3'- -GGGGU--UCUG---CUUGUAGGUGG--UCUCGu -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 193714 | 0.69 | 0.93833 |
Target: 5'- gUCCGAGACGAcCGUCgGCCuuauacggcaaccGGGGCGu -3' miRNA: 3'- gGGGUUCUGCUuGUAGgUGG-------------UCUCGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 85073 | 0.69 | 0.928816 |
Target: 5'- gCUCCAGGACGuu-GUCCgACCAGGuGCGc -3' miRNA: 3'- -GGGGUUCUGCuugUAGG-UGGUCU-CGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 79985 | 0.69 | 0.923463 |
Target: 5'- gUCCGGGGCGuccggGGCGUCCG-CGGAGCGc -3' miRNA: 3'- gGGGUUCUGC-----UUGUAGGUgGUCUCGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 50312 | 0.7 | 0.9144 |
Target: 5'- gCCCCGAGcggcccgaccgguucGCGGACGagCGCCgacGGAGCGg -3' miRNA: 3'- -GGGGUUC---------------UGCUUGUagGUGG---UCUCGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 133901 | 0.7 | 0.912039 |
Target: 5'- cCCCCGAGGCcAGCggCCGCCugcuGCAg -3' miRNA: 3'- -GGGGUUCUGcUUGuaGGUGGucu-CGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 108514 | 0.7 | 0.905971 |
Target: 5'- uCCCCAGcagcggguccggcGGCGAGCGgcguucugggcggcgCgGCCAGAGCGa -3' miRNA: 3'- -GGGGUU-------------CUGCUUGUa--------------GgUGGUCUCGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 97405 | 0.7 | 0.899669 |
Target: 5'- gUUCGAGACGAGCGUCgACgggacggaAGAGCAg -3' miRNA: 3'- gGGGUUCUGCUUGUAGgUGg-------UCUCGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 56471 | 0.7 | 0.893134 |
Target: 5'- gCCCAAGACGGGC-UUgACCAGGucguGCGc -3' miRNA: 3'- gGGGUUCUGCUUGuAGgUGGUCU----CGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 130556 | 0.7 | 0.893134 |
Target: 5'- uCCUCGAGACGAcaGCAccaacUCCGCCuGGcGCGa -3' miRNA: 3'- -GGGGUUCUGCU--UGU-----AGGUGGuCU-CGU- -5' |
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10939 | 5' | -53.1 | NC_002794.1 | + | 45825 | 0.7 | 0.892468 |
Target: 5'- gCCgCCGAGugGAGCcgCUACCGacugcggugggacGAGCGc -3' miRNA: 3'- -GG-GGUUCugCUUGuaGGUGGU-------------CUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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