miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10939 5' -53.1 NC_002794.1 + 4384 0.67 0.966442
Target:  5'- aCCCAgcggcagccacGGGCGAuCGUCCGCCAccGAGa- -3'
miRNA:   3'- gGGGU-----------UCUGCUuGUAGGUGGU--CUCgu -5'
10939 5' -53.1 NC_002794.1 + 8372 0.69 0.938807
Target:  5'- gCCgAGGACGAggccgcGCAggCgGCCAGGGCGc -3'
miRNA:   3'- gGGgUUCUGCU------UGUa-GgUGGUCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 8908 0.66 0.988706
Target:  5'- cCCCCGGGcCGcuGGCcgCCGCCuccAGCAg -3'
miRNA:   3'- -GGGGUUCuGC--UUGuaGGUGGuc-UCGU- -5'
10939 5' -53.1 NC_002794.1 + 9650 0.66 0.985261
Target:  5'- gCCCCAGGGCaGAugGCGguccgggucccgCCACCAGuGUc -3'
miRNA:   3'- -GGGGUUCUG-CU--UGUa-----------GGUGGUCuCGu -5'
10939 5' -53.1 NC_002794.1 + 14892 0.71 0.879383
Target:  5'- aCUCCGucgGGGCGAACAacUCCGagaCGGAGCu -3'
miRNA:   3'- -GGGGU---UCUGCUUGU--AGGUg--GUCUCGu -5'
10939 5' -53.1 NC_002794.1 + 15526 0.68 0.952018
Target:  5'- gCCCAGGAugaucaCGAGCAUcgCCACgCAGAGg- -3'
miRNA:   3'- gGGGUUCU------GCUUGUA--GGUG-GUCUCgu -5'
10939 5' -53.1 NC_002794.1 + 24508 0.66 0.988706
Target:  5'- gUCCGAgguGACGAAucgguuguCAUCCGCCugaaugucgAGAGCAa -3'
miRNA:   3'- gGGGUU---CUGCUU--------GUAGGUGG---------UCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 36289 0.67 0.977497
Target:  5'- -gCCAuucauuguuGGCGGGCgggGUCCACCAGGGUu -3'
miRNA:   3'- ggGGUu--------CUGCUUG---UAGGUGGUCUCGu -5'
10939 5' -53.1 NC_002794.1 + 42810 0.69 0.938807
Target:  5'- uCCCUcGGGCGGACgGUCC-CC-GAGCGa -3'
miRNA:   3'- -GGGGuUCUGCUUG-UAGGuGGuCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 44026 0.66 0.985604
Target:  5'- cCCCCGAcgccguucGGCGAgGCGUUCAUCGGcGCGc -3'
miRNA:   3'- -GGGGUU--------CUGCU-UGUAGGUGGUCuCGU- -5'
10939 5' -53.1 NC_002794.1 + 44280 0.67 0.975028
Target:  5'- cCCCCGGcGGCGcgcGCcgCCGCCGcGGGCc -3'
miRNA:   3'- -GGGGUU-CUGCu--UGuaGGUGGU-CUCGu -5'
10939 5' -53.1 NC_002794.1 + 45057 0.77 0.560112
Target:  5'- gCCCCGcGGCGGACGgccgagCCGCUGGAGCu -3'
miRNA:   3'- -GGGGUuCUGCUUGUa-----GGUGGUCUCGu -5'
10939 5' -53.1 NC_002794.1 + 45658 0.67 0.966442
Target:  5'- gCCUCAcGACGAGCGgcugCUGCC-GAGCu -3'
miRNA:   3'- -GGGGUuCUGCUUGUa---GGUGGuCUCGu -5'
10939 5' -53.1 NC_002794.1 + 45825 0.7 0.892468
Target:  5'- gCCgCCGAGugGAGCcgCUACCGacugcggugggacGAGCGc -3'
miRNA:   3'- -GG-GGUUCugCUUGuaGGUGGU-------------CUCGU- -5'
10939 5' -53.1 NC_002794.1 + 47751 0.67 0.970675
Target:  5'- gCUCAAGAagcgacggucgguguCGGGCGcggggCCGCCGGGGCGa -3'
miRNA:   3'- gGGGUUCU---------------GCUUGUa----GGUGGUCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 49875 0.66 0.981889
Target:  5'- gCCCAGaGCgcccaGAACggCCGCCGGGGCc -3'
miRNA:   3'- gGGGUUcUG-----CUUGuaGGUGGUCUCGu -5'
10939 5' -53.1 NC_002794.1 + 50070 0.71 0.864751
Target:  5'- uCCCCGgccggcucGGACGAcgacGCcgCCGCCGGcGGCGa -3'
miRNA:   3'- -GGGGU--------UCUGCU----UGuaGGUGGUC-UCGU- -5'
10939 5' -53.1 NC_002794.1 + 50097 0.76 0.610862
Target:  5'- aCCCCGAG-CGAGCG-CCACgCGGAGUc -3'
miRNA:   3'- -GGGGUUCuGCUUGUaGGUG-GUCUCGu -5'
10939 5' -53.1 NC_002794.1 + 50312 0.7 0.9144
Target:  5'- gCCCCGAGcggcccgaccgguucGCGGACGagCGCCgacGGAGCGg -3'
miRNA:   3'- -GGGGUUC---------------UGCUUGUagGUGG---UCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 51046 0.66 0.981889
Target:  5'- uUCCGGGcguccgugcacGCGGACGagCCGCUGGAGCGg -3'
miRNA:   3'- gGGGUUC-----------UGCUUGUa-GGUGGUCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.