miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10939 5' -53.1 NC_002794.1 + 52037 0.67 0.97425
Target:  5'- uUCCCAuGGCGAGCGgccgguccgacgccUCCGgCCAG-GCGa -3'
miRNA:   3'- -GGGGUuCUGCUUGU--------------AGGU-GGUCuCGU- -5'
10939 5' -53.1 NC_002794.1 + 52141 0.68 0.963166
Target:  5'- gCCCC--GGCGGGCGUcguccucgcCCGCCGGAcGCGc -3'
miRNA:   3'- -GGGGuuCUGCUUGUA---------GGUGGUCU-CGU- -5'
10939 5' -53.1 NC_002794.1 + 52712 0.67 0.972367
Target:  5'- uCCCCGcggaAGuacGCGGugAagCGCCAGAGCu -3'
miRNA:   3'- -GGGGU----UC---UGCUugUagGUGGUCUCGu -5'
10939 5' -53.1 NC_002794.1 + 56471 0.7 0.893134
Target:  5'- gCCCAAGACGGGC-UUgACCAGGucguGCGc -3'
miRNA:   3'- gGGGUUCUGCUUGuAGgUGGUCU----CGU- -5'
10939 5' -53.1 NC_002794.1 + 65834 0.66 0.986271
Target:  5'- gCCUCGcgcGAgGAGCGUCCgucaucgucgccgucACCGGAGCc -3'
miRNA:   3'- -GGGGUu--CUgCUUGUAGG---------------UGGUCUCGu -5'
10939 5' -53.1 NC_002794.1 + 66932 0.73 0.770793
Target:  5'- uCgCCGAcGACGAACGUCCGgUGGAGCc -3'
miRNA:   3'- -GgGGUU-CUGCUUGUAGGUgGUCUCGu -5'
10939 5' -53.1 NC_002794.1 + 67395 0.71 0.857118
Target:  5'- gCCCAGGACGAcCggUCACCGGGucGCGg -3'
miRNA:   3'- gGGGUUCUGCUuGuaGGUGGUCU--CGU- -5'
10939 5' -53.1 NC_002794.1 + 74389 0.73 0.79568
Target:  5'- aCCgUCGAGACGAccgccgguucggacGCGgccUCCGCCGGGGCGa -3'
miRNA:   3'- -GG-GGUUCUGCU--------------UGU---AGGUGGUCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 79467 0.66 0.983263
Target:  5'- gUCgAAGACGAagguguggcggggcGCGagCACCAGGGCGc -3'
miRNA:   3'- gGGgUUCUGCU--------------UGUagGUGGUCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 79985 0.69 0.923463
Target:  5'- gUCCGGGGCGuccggGGCGUCCG-CGGAGCGc -3'
miRNA:   3'- gGGGUUCUGC-----UUGUAGGUgGUCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 81930 0.67 0.972367
Target:  5'- gCCgCCGAGGCGAcggGCcgCUGCCGG-GCu -3'
miRNA:   3'- -GG-GGUUCUGCU---UGuaGGUGGUCuCGu -5'
10939 5' -53.1 NC_002794.1 + 84035 0.69 0.938807
Target:  5'- gUCCCAgaAGGCgcgGAACGUCUGCCcgAGAGCc -3'
miRNA:   3'- -GGGGU--UCUG---CUUGUAGGUGG--UCUCGu -5'
10939 5' -53.1 NC_002794.1 + 85073 0.69 0.928816
Target:  5'- gCUCCAGGACGuu-GUCCgACCAGGuGCGc -3'
miRNA:   3'- -GGGGUUCUGCuugUAGG-UGGUCU-CGU- -5'
10939 5' -53.1 NC_002794.1 + 92011 0.72 0.824619
Target:  5'- aCCaCCGAG-CGGGCcgCCGCCgacgAGAGCGa -3'
miRNA:   3'- -GG-GGUUCuGCUUGuaGGUGG----UCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 93237 0.67 0.969507
Target:  5'- gCCgCAccuGGCGGuCAUCCGCCGGcuGGCGg -3'
miRNA:   3'- -GGgGUu--CUGCUuGUAGGUGGUC--UCGU- -5'
10939 5' -53.1 NC_002794.1 + 97405 0.7 0.899669
Target:  5'- gUUCGAGACGAGCGUCgACgggacggaAGAGCAg -3'
miRNA:   3'- gGGGUUCUGCUUGUAGgUGg-------UCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 108514 0.7 0.905971
Target:  5'- uCCCCAGcagcggguccggcGGCGAGCGgcguucugggcggcgCgGCCAGAGCGa -3'
miRNA:   3'- -GGGGUU-------------CUGCUUGUa--------------GgUGGUCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 109766 0.67 0.966442
Target:  5'- gCCgCCGGGACGGAUGcUCCgGCCcGAGCc -3'
miRNA:   3'- -GG-GGUUCUGCUUGU-AGG-UGGuCUCGu -5'
10939 5' -53.1 NC_002794.1 + 110306 0.67 0.96921
Target:  5'- gCCCCGGGACGGcuuccugccacgcGCGaCCAaUCGGGGCc -3'
miRNA:   3'- -GGGGUUCUGCU-------------UGUaGGU-GGUCUCGu -5'
10939 5' -53.1 NC_002794.1 + 112814 0.72 0.840434
Target:  5'- aCCCAcggcggaGGACGAGCGcCCACCcacGGGCGc -3'
miRNA:   3'- gGGGU-------UCUGCUUGUaGGUGGu--CUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.