miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10939 5' -53.1 NC_002794.1 + 193786 0.68 0.947418
Target:  5'- gUCCGAGACGAccgccggccuuauACggCgACCGGGGCGu -3'
miRNA:   3'- gGGGUUCUGCU-------------UGuaGgUGGUCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 193714 0.69 0.93833
Target:  5'- gUCCGAGACGAcCGUCgGCCuuauacggcaaccGGGGCGu -3'
miRNA:   3'- gGGGUUCUGCUuGUAGgUGG-------------UCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 193569 0.72 0.816037
Target:  5'- -gCCGGGGCGugucAUAUCCACCucccAGAGCAa -3'
miRNA:   3'- ggGGUUCUGCu---UGUAGGUGG----UCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 189035 0.67 0.966442
Target:  5'- aCCCAGGACGAAgAgaaccccgggCCGgCCGGAGa- -3'
miRNA:   3'- gGGGUUCUGCUUgUa---------GGU-GGUCUCgu -5'
10939 5' -53.1 NC_002794.1 + 185683 0.66 0.981686
Target:  5'- aCCCGAGAccuagacCGGGCAagUCCGCUAGAcCGg -3'
miRNA:   3'- gGGGUUCU-------GCUUGU--AGGUGGUCUcGU- -5'
10939 5' -53.1 NC_002794.1 + 185202 0.67 0.966442
Target:  5'- gCCC--GACGAGCGUcuggagCCGCCuGAGCu -3'
miRNA:   3'- gGGGuuCUGCUUGUA------GGUGGuCUCGu -5'
10939 5' -53.1 NC_002794.1 + 182765 0.67 0.979782
Target:  5'- gUCCCGggGGACGAgguGCGUUCGgCGGGGUc -3'
miRNA:   3'- -GGGGU--UCUGCU---UGUAGGUgGUCUCGu -5'
10939 5' -53.1 NC_002794.1 + 180693 0.67 0.972367
Target:  5'- aCCgCAGGAgGGcCGUUCGCCGGAGa- -3'
miRNA:   3'- -GGgGUUCUgCUuGUAGGUGGUCUCgu -5'
10939 5' -53.1 NC_002794.1 + 177693 0.68 0.952018
Target:  5'- aCCCCucuacauGACGuuCAUCCGCCAccGCGa -3'
miRNA:   3'- -GGGGuu-----CUGCuuGUAGGUGGUcuCGU- -5'
10939 5' -53.1 NC_002794.1 + 175431 0.71 0.863997
Target:  5'- aCCCCGcgccggaGGACGuGCA-CCGCUGGAGCc -3'
miRNA:   3'- -GGGGU-------UCUGCuUGUaGGUGGUCUCGu -5'
10939 5' -53.1 NC_002794.1 + 170654 0.67 0.966442
Target:  5'- aCCCCAAGAgauCGAucacacaacACAcgCCACCAgccGAGCc -3'
miRNA:   3'- -GGGGUUCU---GCU---------UGUa-GGUGGU---CUCGu -5'
10939 5' -53.1 NC_002794.1 + 162586 0.66 0.987228
Target:  5'- gCCUAcGACGAGgAggaCCACCAGgAGUAu -3'
miRNA:   3'- gGGGUuCUGCUUgUa--GGUGGUC-UCGU- -5'
10939 5' -53.1 NC_002794.1 + 161855 0.66 0.986756
Target:  5'- aUCCAAGACcugacgccguccauCAUCgACCAGAGCc -3'
miRNA:   3'- gGGGUUCUGcuu-----------GUAGgUGGUCUCGu -5'
10939 5' -53.1 NC_002794.1 + 158328 0.76 0.621088
Target:  5'- gUCCCGgcuGGCGAACAgCCGCCGGAGgGg -3'
miRNA:   3'- -GGGGUu--CUGCUUGUaGGUGGUCUCgU- -5'
10939 5' -53.1 NC_002794.1 + 155530 0.66 0.987228
Target:  5'- aCCCGccgcGCGGACGcgCCACCGGcGGCGc -3'
miRNA:   3'- gGGGUuc--UGCUUGUa-GGUGGUC-UCGU- -5'
10939 5' -53.1 NC_002794.1 + 153830 0.67 0.969507
Target:  5'- uCCCCGAGAUGGug-UUCAUgCGGAGCGc -3'
miRNA:   3'- -GGGGUUCUGCUuguAGGUG-GUCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 149834 0.69 0.943445
Target:  5'- uCUCUAuuAGACGAAaacgAUCCcCCGGAGCGg -3'
miRNA:   3'- -GGGGU--UCUGCUUg---UAGGuGGUCUCGU- -5'
10939 5' -53.1 NC_002794.1 + 148377 0.67 0.979782
Target:  5'- gCCCGGGGuCGAGC-UUCACCAGcuGCc -3'
miRNA:   3'- gGGGUUCU-GCUUGuAGGUGGUCu-CGu -5'
10939 5' -53.1 NC_002794.1 + 147390 0.66 0.983827
Target:  5'- aCgUCAGGGCGAAg--CCGCCGG-GCAg -3'
miRNA:   3'- -GgGGUUCUGCUUguaGGUGGUCuCGU- -5'
10939 5' -53.1 NC_002794.1 + 146597 0.68 0.963166
Target:  5'- aCCCAcGACGGGCGcUCCaacgGCCcGGGCGc -3'
miRNA:   3'- gGGGUuCUGCUUGU-AGG----UGGuCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.