miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1094 3' -50.8 NC_000929.1 + 7118 0.66 0.854155
Target:  5'- ---uUGUGCUGAauacUGACCGGCAA--CCa -3'
miRNA:   3'- cgccACAUGACU----ACUGGUCGUUacGG- -5'
1094 3' -50.8 NC_000929.1 + 7893 0.68 0.742534
Target:  5'- gGCGGaUGUACUccucGcgGGCUGuuucauuuuGCAGUGCCa -3'
miRNA:   3'- -CGCC-ACAUGA----CuaCUGGU---------CGUUACGG- -5'
1094 3' -50.8 NC_000929.1 + 9893 0.67 0.796227
Target:  5'- uGUGGUu--CUGAUaACCAuCAGUGCCg -3'
miRNA:   3'- -CGCCAcauGACUAcUGGUcGUUACGG- -5'
1094 3' -50.8 NC_000929.1 + 10452 0.66 0.835782
Target:  5'- uGCGGgauuaUGGUGAcaggaaauaaCCGGCAggAUGCCg -3'
miRNA:   3'- -CGCCacaugACUACU----------GGUCGU--UACGG- -5'
1094 3' -50.8 NC_000929.1 + 11094 0.73 0.427019
Target:  5'- gGCGG-GUGCUGu---CCAGCcuGUGCCa -3'
miRNA:   3'- -CGCCaCAUGACuacuGGUCGu-UACGG- -5'
1094 3' -50.8 NC_000929.1 + 11640 0.67 0.810465
Target:  5'- uGCGGccugaUGUGCUGA-GA-CAGCAGccgauggcgaacuacUGCCa -3'
miRNA:   3'- -CGCC-----ACAUGACUaCUgGUCGUU---------------ACGG- -5'
1094 3' -50.8 NC_000929.1 + 14889 0.66 0.815451
Target:  5'- cGUGGUuugaagaugcccuGU-UUGAUG-CCGGUGAUGCCa -3'
miRNA:   3'- -CGCCA-------------CAuGACUACuGGUCGUUACGG- -5'
1094 3' -50.8 NC_000929.1 + 18073 0.67 0.768806
Target:  5'- uGCGcUGUccauugacgaugacgGCUGGUG-CCAGCuauUGCCu -3'
miRNA:   3'- -CGCcACA---------------UGACUACuGGUCGuu-ACGG- -5'
1094 3' -50.8 NC_000929.1 + 18172 0.66 0.816442
Target:  5'- aCGG-GcACUGAaaUGACCGGCAG-GCa -3'
miRNA:   3'- cGCCaCaUGACU--ACUGGUCGUUaCGg -5'
1094 3' -50.8 NC_000929.1 + 18454 0.66 0.813463
Target:  5'- uGCGGUGcugcaaauccgccuUGCUGcgcugaccaAUGACCc-CGGUGCCa -3'
miRNA:   3'- -CGCCAC--------------AUGAC---------UACUGGucGUUACGG- -5'
1094 3' -50.8 NC_000929.1 + 19029 0.73 0.437239
Target:  5'- gGCGGUGcugucUGCUGAUGAacaggCAGCAGUGa- -3'
miRNA:   3'- -CGCCAC-----AUGACUACUg----GUCGUUACgg -5'
1094 3' -50.8 NC_000929.1 + 21936 0.68 0.742534
Target:  5'- uGUGGUGUAUUccgcagggGAcgGcACCGGUAAUGCUg -3'
miRNA:   3'- -CGCCACAUGA--------CUa-C-UGGUCGUUACGG- -5'
1094 3' -50.8 NC_000929.1 + 24125 0.69 0.667113
Target:  5'- aCGGUGaUAUUGAgagaggguuuuagccUG-CUGGCAGUGCCg -3'
miRNA:   3'- cGCCAC-AUGACU---------------ACuGGUCGUUACGG- -5'
1094 3' -50.8 NC_000929.1 + 24388 0.67 0.806438
Target:  5'- gGCGGUGUAacccacGCCAGCGAUaCCc -3'
miRNA:   3'- -CGCCACAUgacuacUGGUCGUUAcGG- -5'
1094 3' -50.8 NC_000929.1 + 25892 0.67 0.796227
Target:  5'- cCGGUGc----AUGGCuCGGCGGUGCCg -3'
miRNA:   3'- cGCCACaugacUACUG-GUCGUUACGG- -5'
1094 3' -50.8 NC_000929.1 + 27275 0.68 0.708696
Target:  5'- aGCaGaUGUGCUGcUGGCCccgcuGGCuGUGCCg -3'
miRNA:   3'- -CGcC-ACAUGACuACUGG-----UCGuUACGG- -5'
1094 3' -50.8 NC_000929.1 + 27660 0.66 0.816442
Target:  5'- aCGGguUGCUGAUaccguuccugcgGGCCAGCcguUGCCa -3'
miRNA:   3'- cGCCacAUGACUA------------CUGGUCGuu-ACGG- -5'
1094 3' -50.8 NC_000929.1 + 28137 1.16 0.000543
Target:  5'- cGCGGUGUACUGAUGACCAGCAAUGCCg -3'
miRNA:   3'- -CGCCACAUGACUACUGGUCGUUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.