Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1094 | 5' | -57.5 | NC_000929.1 | + | 30132 | 0.66 | 0.450588 |
Target: 5'- gUGGUGacagUCAG-CGGGCcGCUGGCGg -3' miRNA: 3'- gACCAUa---AGUCgGCCCGaCGGUCGUg -5' |
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1094 | 5' | -57.5 | NC_000929.1 | + | 25581 | 0.68 | 0.330211 |
Target: 5'- -cGGUAc---GCCGGGUggggguaaUGCCAGUACa -3' miRNA: 3'- gaCCAUaaguCGGCCCG--------ACGGUCGUG- -5' |
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1094 | 5' | -57.5 | NC_000929.1 | + | 33973 | 0.69 | 0.268765 |
Target: 5'- gCUGGUAUU--GCUcuuuuguuuuaGGGUUGCCAGCAg -3' miRNA: 3'- -GACCAUAAguCGG-----------CCCGACGGUCGUg -5' |
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1094 | 5' | -57.5 | NC_000929.1 | + | 23151 | 0.72 | 0.188991 |
Target: 5'- aCUGGUuaaUCAGauuCGGGCcGCaCAGCACa -3' miRNA: 3'- -GACCAua-AGUCg--GCCCGaCG-GUCGUG- -5' |
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1094 | 5' | -57.5 | NC_000929.1 | + | 30210 | 0.74 | 0.123468 |
Target: 5'- aUGGUA-UCAGCCaGGCUGUaaaccacaccauCAGCACg -3' miRNA: 3'- gACCAUaAGUCGGcCCGACG------------GUCGUG- -5' |
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1094 | 5' | -57.5 | NC_000929.1 | + | 28172 | 1.1 | 0.000234 |
Target: 5'- gCUGGUAUUCAGCCGGGCUGCCAGCACa -3' miRNA: 3'- -GACCAUAAGUCGGCCCGACGGUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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