miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1094 5' -57.5 NC_000929.1 + 30132 0.66 0.450588
Target:  5'- gUGGUGacagUCAG-CGGGCcGCUGGCGg -3'
miRNA:   3'- gACCAUa---AGUCgGCCCGaCGGUCGUg -5'
1094 5' -57.5 NC_000929.1 + 25581 0.68 0.330211
Target:  5'- -cGGUAc---GCCGGGUggggguaaUGCCAGUACa -3'
miRNA:   3'- gaCCAUaaguCGGCCCG--------ACGGUCGUG- -5'
1094 5' -57.5 NC_000929.1 + 33973 0.69 0.268765
Target:  5'- gCUGGUAUU--GCUcuuuuguuuuaGGGUUGCCAGCAg -3'
miRNA:   3'- -GACCAUAAguCGG-----------CCCGACGGUCGUg -5'
1094 5' -57.5 NC_000929.1 + 23151 0.72 0.188991
Target:  5'- aCUGGUuaaUCAGauuCGGGCcGCaCAGCACa -3'
miRNA:   3'- -GACCAua-AGUCg--GCCCGaCG-GUCGUG- -5'
1094 5' -57.5 NC_000929.1 + 30210 0.74 0.123468
Target:  5'- aUGGUA-UCAGCCaGGCUGUaaaccacaccauCAGCACg -3'
miRNA:   3'- gACCAUaAGUCGGcCCGACG------------GUCGUG- -5'
1094 5' -57.5 NC_000929.1 + 28172 1.1 0.000234
Target:  5'- gCUGGUAUUCAGCCGGGCUGCCAGCACa -3'
miRNA:   3'- -GACCAUAAGUCGGCCCGACGGUCGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.