miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10940 3' -53.1 NC_002794.1 + 42953 0.66 0.990684
Target:  5'- cUGCACGccaUCGUCCGgAUCgAGGCccGGGc -3'
miRNA:   3'- aGCGUGC---AGCAGGC-UAG-UCUGaaCCU- -5'
10940 3' -53.1 NC_002794.1 + 49466 0.66 0.987117
Target:  5'- aCGCuCGUcCGUCCGAUCguccgcccgcaccauGGACUacgcGGAg -3'
miRNA:   3'- aGCGuGCA-GCAGGCUAG---------------UCUGAa---CCU- -5'
10940 3' -53.1 NC_002794.1 + 85700 0.66 0.986486
Target:  5'- -aGCACGUCGUCgCGGggcaUgAGGCUcgagaUGGGc -3'
miRNA:   3'- agCGUGCAGCAG-GCU----AgUCUGA-----ACCU- -5'
10940 3' -53.1 NC_002794.1 + 89588 0.66 0.986486
Target:  5'- cCGCGCGUCGcgCCGccUCGGACggcGAg -3'
miRNA:   3'- aGCGUGCAGCa-GGCu-AGUCUGaacCU- -5'
10940 3' -53.1 NC_002794.1 + 139854 0.66 0.984805
Target:  5'- -aGCAUGaCGUagCGGUCGGACU-GGAa -3'
miRNA:   3'- agCGUGCaGCAg-GCUAGUCUGAaCCU- -5'
10940 3' -53.1 NC_002794.1 + 148216 0.67 0.982969
Target:  5'- -gGCACGuggUCGUCCcgaacGAUCGGACagUGGu -3'
miRNA:   3'- agCGUGC---AGCAGG-----CUAGUCUGa-ACCu -5'
10940 3' -53.1 NC_002794.1 + 67109 0.67 0.982776
Target:  5'- aCGCcCGUCGagagcggUCCGGUCAgGGCcgggUGGAc -3'
miRNA:   3'- aGCGuGCAGC-------AGGCUAGU-CUGa---ACCU- -5'
10940 3' -53.1 NC_002794.1 + 79039 0.67 0.9788
Target:  5'- gCGCGgGUCGcUCUGGUCccgGGACgcgcggUGGAu -3'
miRNA:   3'- aGCGUgCAGC-AGGCUAG---UCUGa-----ACCU- -5'
10940 3' -53.1 NC_002794.1 + 147257 0.67 0.971196
Target:  5'- gUCGC-CGUCGgcgUCGGccUCAGACgcGGAg -3'
miRNA:   3'- -AGCGuGCAGCa--GGCU--AGUCUGaaCCU- -5'
10940 3' -53.1 NC_002794.1 + 151881 0.68 0.968273
Target:  5'- -aGCugGUCGUUgGAgcCGGACgugUGGGa -3'
miRNA:   3'- agCGugCAGCAGgCUa-GUCUGa--ACCU- -5'
10940 3' -53.1 NC_002794.1 + 125811 0.68 0.965146
Target:  5'- aCGUAgGUCGcCCGGUCGGGCg---- -3'
miRNA:   3'- aGCGUgCAGCaGGCUAGUCUGaaccu -5'
10940 3' -53.1 NC_002794.1 + 49006 0.68 0.958254
Target:  5'- gUGCGCGUCGUUCGcguUCGGG--UGGGg -3'
miRNA:   3'- aGCGUGCAGCAGGCu--AGUCUgaACCU- -5'
10940 3' -53.1 NC_002794.1 + 88780 0.69 0.946256
Target:  5'- -gGCAUGUCGgagCCGA-CGGGCggGGGu -3'
miRNA:   3'- agCGUGCAGCa--GGCUaGUCUGaaCCU- -5'
10940 3' -53.1 NC_002794.1 + 88175 0.69 0.932187
Target:  5'- gUGCugGacauguUCGUCaCGAUCAGACgggUGGu -3'
miRNA:   3'- aGCGugC------AGCAG-GCUAGUCUGa--ACCu -5'
10940 3' -53.1 NC_002794.1 + 74672 0.7 0.927028
Target:  5'- cCGCACGaCGaUCCGAUCGgggucGACUUcGGGg -3'
miRNA:   3'- aGCGUGCaGC-AGGCUAGU-----CUGAA-CCU- -5'
10940 3' -53.1 NC_002794.1 + 19976 0.71 0.870157
Target:  5'- gUCGCACGUCuUCCGAucguugcgUCAG-CUgGGAa -3'
miRNA:   3'- -AGCGUGCAGcAGGCU--------AGUCuGAaCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.