miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10940 5' -52.1 NC_002794.1 + 53796 0.66 0.994973
Target:  5'- cGGUGCGGGCUccUCG-GUCaaaCCGUGg -3'
miRNA:   3'- -CCACGCUCGGa-AGUuUAGga-GGCACg -5'
10940 5' -52.1 NC_002794.1 + 124493 0.66 0.994973
Target:  5'- aGGUGCGgcAGCCgcccCAGGaccUCCUCCacggucUGCg -3'
miRNA:   3'- -CCACGC--UCGGaa--GUUU---AGGAGGc-----ACG- -5'
10940 5' -52.1 NC_002794.1 + 75710 0.66 0.994973
Target:  5'- cGGUGCcggacgacGAGgaCCUcgAGAUCCUCCGcGCc -3'
miRNA:   3'- -CCACG--------CUC--GGAagUUUAGGAGGCaCG- -5'
10940 5' -52.1 NC_002794.1 + 172611 0.66 0.993296
Target:  5'- cGUGCGAGCCUcCGccgCCggaaCCGUucGCu -3'
miRNA:   3'- cCACGCUCGGAaGUuuaGGa---GGCA--CG- -5'
10940 5' -52.1 NC_002794.1 + 136271 0.66 0.992304
Target:  5'- --cGCGcacuGCCcgCAGcagcucUCCUCCGUGCu -3'
miRNA:   3'- ccaCGCu---CGGaaGUUu-----AGGAGGCACG- -5'
10940 5' -52.1 NC_002794.1 + 88506 0.66 0.992304
Target:  5'- cGGUcgccGCGAGCgaUC---UCCUCCGUcGUg -3'
miRNA:   3'- -CCA----CGCUCGgaAGuuuAGGAGGCA-CG- -5'
10940 5' -52.1 NC_002794.1 + 79714 0.66 0.992304
Target:  5'- cGGcgGCcaGGGCCUgCAccgCCUCCGUGg -3'
miRNA:   3'- -CCa-CG--CUCGGAaGUuuaGGAGGCACg -5'
10940 5' -52.1 NC_002794.1 + 12503 0.66 0.989971
Target:  5'- --aGCGcGCCggacccCAGGUCCcggCCGUGCc -3'
miRNA:   3'- ccaCGCuCGGaa----GUUUAGGa--GGCACG- -5'
10940 5' -52.1 NC_002794.1 + 136468 0.67 0.988614
Target:  5'- -cUGCGGGCCU---AcgCCUacgCCGUGCc -3'
miRNA:   3'- ccACGCUCGGAaguUuaGGA---GGCACG- -5'
10940 5' -52.1 NC_002794.1 + 49664 0.67 0.987734
Target:  5'- aGGcGCGGGCCUUgGGacugacuuacucgucGUCCUCCucgGUcGCg -3'
miRNA:   3'- -CCaCGCUCGGAAgUU---------------UAGGAGG---CA-CG- -5'
10940 5' -52.1 NC_002794.1 + 3917 0.67 0.987118
Target:  5'- cGGcgGCGAGuCCUcCGAcggcUCCUCCGacgGCu -3'
miRNA:   3'- -CCa-CGCUC-GGAaGUUu---AGGAGGCa--CG- -5'
10940 5' -52.1 NC_002794.1 + 77355 0.67 0.987118
Target:  5'- cGUGCGGGCCgacCAGGaCCgcCCGcUGCu -3'
miRNA:   3'- cCACGCUCGGaa-GUUUaGGa-GGC-ACG- -5'
10940 5' -52.1 NC_002794.1 + 195042 0.67 0.987118
Target:  5'- gGGaGgGGGCCUUU---UCCUCCGguccccgGCg -3'
miRNA:   3'- -CCaCgCUCGGAAGuuuAGGAGGCa------CG- -5'
10940 5' -52.1 NC_002794.1 + 48539 0.67 0.983677
Target:  5'- cGUGCG-GCuCUUCGGggCCgaucUCGUGCg -3'
miRNA:   3'- cCACGCuCG-GAAGUUuaGGa---GGCACG- -5'
10940 5' -52.1 NC_002794.1 + 175210 0.67 0.981716
Target:  5'- uGGUGCGAGCaag-GGGUCCUgC-UGCu -3'
miRNA:   3'- -CCACGCUCGgaagUUUAGGAgGcACG- -5'
10940 5' -52.1 NC_002794.1 + 114022 0.67 0.981716
Target:  5'- cGGUGCaGGUCUUCcucgaCCUCCGcaGCg -3'
miRNA:   3'- -CCACGcUCGGAAGuuua-GGAGGCa-CG- -5'
10940 5' -52.1 NC_002794.1 + 131926 0.68 0.979582
Target:  5'- cGGccgGCGAGUC-UCGAGUCCgacgccucgCCGcGCg -3'
miRNA:   3'- -CCa--CGCUCGGaAGUUUAGGa--------GGCaCG- -5'
10940 5' -52.1 NC_002794.1 + 101849 0.69 0.962755
Target:  5'- cGGcgGCGGGCCggCGGGUUCcgCCG-GCg -3'
miRNA:   3'- -CCa-CGCUCGGaaGUUUAGGa-GGCaCG- -5'
10940 5' -52.1 NC_002794.1 + 180587 0.69 0.962755
Target:  5'- --gGCGAGCCgcgCGGcucCCUCCGcGCg -3'
miRNA:   3'- ccaCGCUCGGaa-GUUua-GGAGGCaCG- -5'
10940 5' -52.1 NC_002794.1 + 93751 0.69 0.953088
Target:  5'- cGGUGCGGGUCaUCuacggcgacaccgacAGcgUCUUCGUGCg -3'
miRNA:   3'- -CCACGCUCGGaAG---------------UUuaGGAGGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.