miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10941 3' -56.8 NC_002794.1 + 161092 0.66 0.903164
Target:  5'- uUCGUgGCGcuaccaGUCGGUGCGCGUUAu -3'
miRNA:   3'- uGGCAgUGCua----CAGCCACGUGCGGUu -5'
10941 3' -56.8 NC_002794.1 + 126238 0.66 0.889655
Target:  5'- gACCGUgGCGAUcguggcgcgcgagGUCGGcgGCugGCUg- -3'
miRNA:   3'- -UGGCAgUGCUA-------------CAGCCa-CGugCGGuu -5'
10941 3' -56.8 NC_002794.1 + 131139 0.67 0.883566
Target:  5'- aACUGUCugcCGAUc-CGGUcGCACGCCAGc -3'
miRNA:   3'- -UGGCAGu--GCUAcaGCCA-CGUGCGGUU- -5'
10941 3' -56.8 NC_002794.1 + 106984 0.67 0.862024
Target:  5'- gGCCGgcacgGCGGUGgCGGcGCugGCCGAc -3'
miRNA:   3'- -UGGCag---UGCUACaGCCaCGugCGGUU- -5'
10941 3' -56.8 NC_002794.1 + 125028 0.68 0.830515
Target:  5'- gGCCGUCACcacggcgcaGAUccUGGUGCACGCgAAc -3'
miRNA:   3'- -UGGCAGUG---------CUAcaGCCACGUGCGgUU- -5'
10941 3' -56.8 NC_002794.1 + 49430 0.68 0.822183
Target:  5'- gGCCGUCACGgcGUCcGGcGCGgucguCGCCGu -3'
miRNA:   3'- -UGGCAGUGCuaCAG-CCaCGU-----GCGGUu -5'
10941 3' -56.8 NC_002794.1 + 105761 0.68 0.805023
Target:  5'- cGCCGuUCAuCGggGUCGGUGggcCGCGUCGAu -3'
miRNA:   3'- -UGGC-AGU-GCuaCAGCCAC---GUGCGGUU- -5'
10941 3' -56.8 NC_002794.1 + 190113 0.69 0.79621
Target:  5'- cGCCGUcCGCGccGaagCGGUccGCGCGCCGAu -3'
miRNA:   3'- -UGGCA-GUGCuaCa--GCCA--CGUGCGGUU- -5'
10941 3' -56.8 NC_002794.1 + 152250 0.69 0.778163
Target:  5'- cACCGUCGCc--GUCGGacaGUACGCCGu -3'
miRNA:   3'- -UGGCAGUGcuaCAGCCa--CGUGCGGUu -5'
10941 3' -56.8 NC_002794.1 + 183857 0.69 0.759608
Target:  5'- uCCGUCGCGGccGUCGGgGCcacCGCCGAc -3'
miRNA:   3'- uGGCAGUGCUa-CAGCCaCGu--GCGGUU- -5'
10941 3' -56.8 NC_002794.1 + 187934 0.69 0.750162
Target:  5'- gACCGUCGCGuca-CGcGUGCGCGCgCGAg -3'
miRNA:   3'- -UGGCAGUGCuacaGC-CACGUGCG-GUU- -5'
10941 3' -56.8 NC_002794.1 + 127277 0.72 0.63145
Target:  5'- gACgGUCACGGUGaCGGUGgaaccuccgaccUACGCCGAg -3'
miRNA:   3'- -UGgCAGUGCUACaGCCAC------------GUGCGGUU- -5'
10941 3' -56.8 NC_002794.1 + 12407 0.72 0.63145
Target:  5'- aACCG-CACGcgGaCGGcGCGCGCCGAc -3'
miRNA:   3'- -UGGCaGUGCuaCaGCCaCGUGCGGUU- -5'
10941 3' -56.8 NC_002794.1 + 146974 0.72 0.601234
Target:  5'- cGCCuGUCGCGAgGUCGGcGC-CGCCGg -3'
miRNA:   3'- -UGG-CAGUGCUaCAGCCaCGuGCGGUu -5'
10941 3' -56.8 NC_002794.1 + 146830 0.73 0.550418
Target:  5'- cGCUGUCguuuggcGCGAgaGUCGGUGCGCGUCGu -3'
miRNA:   3'- -UGGCAG-------UGCUa-CAGCCACGUGCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.