miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10941 5' -59.6 NC_002794.1 + 88777 0.66 0.86364
Target:  5'- uCGCCGGUGUaaUC-GGAUCGUGaaCGGg -3'
miRNA:   3'- -GCGGUCGCGc-AGcCCUAGCACgaGCC- -5'
10941 5' -59.6 NC_002794.1 + 141592 0.66 0.86364
Target:  5'- aCGCCcGCGuCGcCGGG--CG-GCUCGGc -3'
miRNA:   3'- -GCGGuCGC-GCaGCCCuaGCaCGAGCC- -5'
10941 5' -59.6 NC_002794.1 + 12186 0.66 0.848978
Target:  5'- aCGCCGcCGCGgcCGGGcgCc-GCUCGGa -3'
miRNA:   3'- -GCGGUcGCGCa-GCCCuaGcaCGAGCC- -5'
10941 5' -59.6 NC_002794.1 + 20029 0.66 0.848978
Target:  5'- cCGagAGCGCgGUCcGGAUCGcGCUCGa -3'
miRNA:   3'- -GCggUCGCG-CAGcCCUAGCaCGAGCc -5'
10941 5' -59.6 NC_002794.1 + 145595 0.66 0.848978
Target:  5'- gGCCGGCucccGCGgagUCGGGcgCGacgaggaGCUCGGc -3'
miRNA:   3'- gCGGUCG----CGC---AGCCCuaGCa------CGAGCC- -5'
10941 5' -59.6 NC_002794.1 + 92311 0.66 0.848978
Target:  5'- gGCUgGGCGCGggcggCGGGGgcccgggCGggcgGCUCGGc -3'
miRNA:   3'- gCGG-UCGCGCa----GCCCUa------GCa---CGAGCC- -5'
10941 5' -59.6 NC_002794.1 + 112735 0.66 0.84444
Target:  5'- aCGCggaaGGCGCGgugcuccgcggcggCGGGGUCGgggugagGuCUCGGa -3'
miRNA:   3'- -GCGg---UCGCGCa-------------GCCCUAGCa------C-GAGCC- -5'
10941 5' -59.6 NC_002794.1 + 107220 0.66 0.833613
Target:  5'- cCGCCGggcggcGCGCGaCGGGggCG-GCgucgCGGa -3'
miRNA:   3'- -GCGGU------CGCGCaGCCCuaGCaCGa---GCC- -5'
10941 5' -59.6 NC_002794.1 + 11875 0.66 0.825682
Target:  5'- cCGCCccGCGaCGgguccucgagCGGGuUCGUGCUCGc -3'
miRNA:   3'- -GCGGu-CGC-GCa---------GCCCuAGCACGAGCc -5'
10941 5' -59.6 NC_002794.1 + 102456 0.66 0.825682
Target:  5'- aCGCUcgaggagaugcGGCGCGUCGG---CGUGC-CGGc -3'
miRNA:   3'- -GCGG-----------UCGCGCAGCCcuaGCACGaGCC- -5'
10941 5' -59.6 NC_002794.1 + 58328 0.67 0.817593
Target:  5'- aCGCCGcGCGUgcucGUCGGGAaccUGccGCUCGGc -3'
miRNA:   3'- -GCGGU-CGCG----CAGCCCUa--GCa-CGAGCC- -5'
10941 5' -59.6 NC_002794.1 + 149742 0.67 0.817593
Target:  5'- uGCCGGUggaGCGgCGGGAcCGcUGuCUCGGc -3'
miRNA:   3'- gCGGUCG---CGCaGCCCUaGC-AC-GAGCC- -5'
10941 5' -59.6 NC_002794.1 + 62348 0.67 0.809354
Target:  5'- gCGCCGGCGCaccUGGucUCGUuggaccGCUCGGa -3'
miRNA:   3'- -GCGGUCGCGca-GCCcuAGCA------CGAGCC- -5'
10941 5' -59.6 NC_002794.1 + 181548 0.67 0.809354
Target:  5'- gGCCGGCGCucucgGUCGccgggccaaucaGGAUCGacagGCUgCGGg -3'
miRNA:   3'- gCGGUCGCG-----CAGC------------CCUAGCa---CGA-GCC- -5'
10941 5' -59.6 NC_002794.1 + 83875 0.67 0.809354
Target:  5'- gGUCGGCGCGaCGGcccCGgGCUCGGc -3'
miRNA:   3'- gCGGUCGCGCaGCCcuaGCaCGAGCC- -5'
10941 5' -59.6 NC_002794.1 + 153514 0.67 0.809354
Target:  5'- aCGuCCGGCGCuauugGUCGGGAgagGUGggCGGc -3'
miRNA:   3'- -GC-GGUCGCG-----CAGCCCUag-CACgaGCC- -5'
10941 5' -59.6 NC_002794.1 + 114565 0.67 0.800971
Target:  5'- gGCCAGgcgcaGCGUCaGcGGAggGUGCUCGu -3'
miRNA:   3'- gCGGUCg----CGCAG-C-CCUagCACGAGCc -5'
10941 5' -59.6 NC_002794.1 + 17440 0.67 0.792451
Target:  5'- cCGCCGGCGC-UCGGGcccgcgaccgagGUCGaagGUUCGc -3'
miRNA:   3'- -GCGGUCGCGcAGCCC------------UAGCa--CGAGCc -5'
10941 5' -59.6 NC_002794.1 + 49103 0.67 0.783802
Target:  5'- gCGCCGGCGC-UCGGcGUCcUGCacCGGg -3'
miRNA:   3'- -GCGGUCGCGcAGCCcUAGcACGa-GCC- -5'
10941 5' -59.6 NC_002794.1 + 146908 0.67 0.778554
Target:  5'- gCGCUcgGGCGCG--GGGAUCGgccggacggagagcGCUCGGu -3'
miRNA:   3'- -GCGG--UCGCGCagCCCUAGCa-------------CGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.