miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10941 5' -59.6 NC_002794.1 + 143305 0.77 0.277015
Target:  5'- gGUgCAGCGCGgCGGGAUggaagucggucgCGUGCUCGGg -3'
miRNA:   3'- gCG-GUCGCGCaGCCCUA------------GCACGAGCC- -5'
10941 5' -59.6 NC_002794.1 + 111398 0.75 0.351586
Target:  5'- gGCCAGCGC-UCGGGGUCGagaccguagGCgCGGa -3'
miRNA:   3'- gCGGUCGCGcAGCCCUAGCa--------CGaGCC- -5'
10941 5' -59.6 NC_002794.1 + 180922 0.75 0.389899
Target:  5'- uCGCCGGCGcCGUCGGaGGUCG-GuCUCGc -3'
miRNA:   3'- -GCGGUCGC-GCAGCC-CUAGCaC-GAGCc -5'
10941 5' -59.6 NC_002794.1 + 193186 0.73 0.439329
Target:  5'- gCGCCAGCGUGUCcaGGUCGUGCgccaccaGGu -3'
miRNA:   3'- -GCGGUCGCGCAGccCUAGCACGag-----CC- -5'
10941 5' -59.6 NC_002794.1 + 184591 0.73 0.447911
Target:  5'- gGCCAcGCGCGgccgCGGGAUCGgcaacgGCcagCGGc -3'
miRNA:   3'- gCGGU-CGCGCa---GCCCUAGCa-----CGa--GCC- -5'
10941 5' -59.6 NC_002794.1 + 111760 0.73 0.456585
Target:  5'- cCGCgCGGCGcCGUCGGGG-CGgGCUCGu -3'
miRNA:   3'- -GCG-GUCGC-GCAGCCCUaGCaCGAGCc -5'
10941 5' -59.6 NC_002794.1 + 94277 0.73 0.456585
Target:  5'- uGCgCGGCGCGgcccgagCGGGGggCG-GCUCGGg -3'
miRNA:   3'- gCG-GUCGCGCa------GCCCUa-GCaCGAGCC- -5'
10941 5' -59.6 NC_002794.1 + 141308 0.72 0.492145
Target:  5'- gCGCCGGCGaCGgcacCGGcGUCG-GCUCGGu -3'
miRNA:   3'- -GCGGUCGC-GCa---GCCcUAGCaCGAGCC- -5'
10941 5' -59.6 NC_002794.1 + 105283 0.72 0.538287
Target:  5'- aGCCAGCGUugcUCGGGGUCccgGCUCa- -3'
miRNA:   3'- gCGGUCGCGc--AGCCCUAGca-CGAGcc -5'
10941 5' -59.6 NC_002794.1 + 185171 0.71 0.576232
Target:  5'- cCGCCGGCGCGgCGcGGUCG-GCgCGGu -3'
miRNA:   3'- -GCGGUCGCGCaGCcCUAGCaCGaGCC- -5'
10941 5' -59.6 NC_002794.1 + 118719 0.7 0.605082
Target:  5'- gGCCAgcuGCGCGUacUGGGcgC-UGCUCGGc -3'
miRNA:   3'- gCGGU---CGCGCA--GCCCuaGcACGAGCC- -5'
10941 5' -59.6 NC_002794.1 + 118279 0.7 0.614743
Target:  5'- gCGCCGGCgucggggaccGCGcCGGGcgCGUcGCUCGu -3'
miRNA:   3'- -GCGGUCG----------CGCaGCCCuaGCA-CGAGCc -5'
10941 5' -59.6 NC_002794.1 + 145830 0.7 0.624415
Target:  5'- aGCCgAGCGCGUCGacGGUCGccacGCUCGa -3'
miRNA:   3'- gCGG-UCGCGCAGCc-CUAGCa---CGAGCc -5'
10941 5' -59.6 NC_002794.1 + 71301 0.7 0.624415
Target:  5'- cCGCCGGCGCGcUCGGGcggCGaGCgcgccaccUCGGc -3'
miRNA:   3'- -GCGGUCGCGC-AGCCCua-GCaCG--------AGCC- -5'
10941 5' -59.6 NC_002794.1 + 119489 0.7 0.634092
Target:  5'- gGUCGGCuGCGuccUCGGGGUCGUcgGCggcgCGGa -3'
miRNA:   3'- gCGGUCG-CGC---AGCCCUAGCA--CGa---GCC- -5'
10941 5' -59.6 NC_002794.1 + 134882 0.7 0.643769
Target:  5'- aCGCCugcGCGCGUUGuaucGGA-CGcGCUCGGg -3'
miRNA:   3'- -GCGGu--CGCGCAGC----CCUaGCaCGAGCC- -5'
10941 5' -59.6 NC_002794.1 + 182793 0.7 0.653436
Target:  5'- uGCCAGCGCacgGUCGcGGUCGacaGCUCGu -3'
miRNA:   3'- gCGGUCGCG---CAGCcCUAGCa--CGAGCc -5'
10941 5' -59.6 NC_002794.1 + 96742 0.7 0.653436
Target:  5'- cCGCCGGCGCGUCucgcaagcggccGGcGGUCGagucGCcCGGg -3'
miRNA:   3'- -GCGGUCGCGCAG------------CC-CUAGCa---CGaGCC- -5'
10941 5' -59.6 NC_002794.1 + 34834 0.69 0.66309
Target:  5'- uCGCCGGCGcCGgagCGGGcGUCGgagcggGCgccgCGGg -3'
miRNA:   3'- -GCGGUCGC-GCa--GCCC-UAGCa-----CGa---GCC- -5'
10941 5' -59.6 NC_002794.1 + 188068 0.69 0.67272
Target:  5'- gGCCAGCGUcaccGUCGGu-UCGgccaaguacUGCUCGGc -3'
miRNA:   3'- gCGGUCGCG----CAGCCcuAGC---------ACGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.