miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10941 5' -59.6 NC_002794.1 + 137348 0.67 0.775031
Target:  5'- gGCuCGGCGuCGUCGGGGucuucuUCGaGC-CGGg -3'
miRNA:   3'- gCG-GUCGC-GCAGCCCU------AGCaCGaGCC- -5'
10941 5' -59.6 NC_002794.1 + 131012 0.67 0.775031
Target:  5'- gGCUcaCGgGUCGGuGGUCGUGCggcgCGGc -3'
miRNA:   3'- gCGGucGCgCAGCC-CUAGCACGa---GCC- -5'
10941 5' -59.6 NC_002794.1 + 143281 0.67 0.775031
Target:  5'- gCGCCGGcCGC-UCGGGGUCGgGCg--- -3'
miRNA:   3'- -GCGGUC-GCGcAGCCCUAGCaCGagcc -5'
10941 5' -59.6 NC_002794.1 + 191871 0.67 0.774148
Target:  5'- gGCCGGCggcggagggggcgGCGgaggCGGGAUCG-GCacCGGg -3'
miRNA:   3'- gCGGUCG-------------CGCa---GCCCUAGCaCGa-GCC- -5'
10941 5' -59.6 NC_002794.1 + 101702 0.68 0.766146
Target:  5'- aGCCGGCGCc-CGaGGA-CGUGUUCGu -3'
miRNA:   3'- gCGGUCGCGcaGC-CCUaGCACGAGCc -5'
10941 5' -59.6 NC_002794.1 + 122693 0.68 0.766146
Target:  5'- gCGCCAGCGC--CGGGcgacguUCGUGCgCGu -3'
miRNA:   3'- -GCGGUCGCGcaGCCCu-----AGCACGaGCc -5'
10941 5' -59.6 NC_002794.1 + 98930 0.68 0.748065
Target:  5'- gGCUgGGCGCGgcCGGGAaggggcuggggcUCGUGCUgGGc -3'
miRNA:   3'- gCGG-UCGCGCa-GCCCU------------AGCACGAgCC- -5'
10941 5' -59.6 NC_002794.1 + 53314 0.68 0.748065
Target:  5'- gGCCGGCGcCG-CGaGAUCG-GCUCGa -3'
miRNA:   3'- gCGGUCGC-GCaGCcCUAGCaCGAGCc -5'
10941 5' -59.6 NC_002794.1 + 110456 0.68 0.729619
Target:  5'- gGCCGGCGaGcCGGcucGUCG-GCUCGGg -3'
miRNA:   3'- gCGGUCGCgCaGCCc--UAGCaCGAGCC- -5'
10941 5' -59.6 NC_002794.1 + 52764 0.68 0.729619
Target:  5'- gCGCCgcGGCcCGggccgCGGGAUCGUgacGCUCGa -3'
miRNA:   3'- -GCGG--UCGcGCa----GCCCUAGCA---CGAGCc -5'
10941 5' -59.6 NC_002794.1 + 138394 0.68 0.729619
Target:  5'- uGCCAGaagGCGUCGaGGUCGUcGC-CGGc -3'
miRNA:   3'- gCGGUCg--CGCAGCcCUAGCA-CGaGCC- -5'
10941 5' -59.6 NC_002794.1 + 50600 0.68 0.720279
Target:  5'- gGCCGGCGcCGggGGGAUCGagacgagcUGCUUGc -3'
miRNA:   3'- gCGGUCGC-GCagCCCUAGC--------ACGAGCc -5'
10941 5' -59.6 NC_002794.1 + 180655 0.69 0.710871
Target:  5'- aGCCAGCGCa--GGG--CGUGC-CGGg -3'
miRNA:   3'- gCGGUCGCGcagCCCuaGCACGaGCC- -5'
10941 5' -59.6 NC_002794.1 + 145317 0.69 0.691885
Target:  5'- -aCCGGCGCG-CGGcGggCGgcGCUCGGg -3'
miRNA:   3'- gcGGUCGCGCaGCC-CuaGCa-CGAGCC- -5'
10941 5' -59.6 NC_002794.1 + 149346 0.69 0.691885
Target:  5'- gGCCGGgGuCG-CGGGggCGUGgaCGGa -3'
miRNA:   3'- gCGGUCgC-GCaGCCCuaGCACgaGCC- -5'
10941 5' -59.6 NC_002794.1 + 102159 0.69 0.682321
Target:  5'- gGCguGCGCGcCGGGGccaUCGUGgCgcgCGGc -3'
miRNA:   3'- gCGguCGCGCaGCCCU---AGCAC-Ga--GCC- -5'
10941 5' -59.6 NC_002794.1 + 188068 0.69 0.67272
Target:  5'- gGCCAGCGUcaccGUCGGu-UCGgccaaguacUGCUCGGc -3'
miRNA:   3'- gCGGUCGCG----CAGCCcuAGC---------ACGAGCC- -5'
10941 5' -59.6 NC_002794.1 + 67408 0.69 0.67272
Target:  5'- gCGCCAGCgucggcgccaGCGUCGGcGG-CGUGUcgcgccgcuUCGGg -3'
miRNA:   3'- -GCGGUCG----------CGCAGCC-CUaGCACG---------AGCC- -5'
10941 5' -59.6 NC_002794.1 + 34834 0.69 0.66309
Target:  5'- uCGCCGGCGcCGgagCGGGcGUCGgagcggGCgccgCGGg -3'
miRNA:   3'- -GCGGUCGC-GCa--GCCC-UAGCa-----CGa---GCC- -5'
10941 5' -59.6 NC_002794.1 + 182793 0.7 0.653436
Target:  5'- uGCCAGCGCacgGUCGcGGUCGacaGCUCGu -3'
miRNA:   3'- gCGGUCGCG---CAGCcCUAGCa--CGAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.