miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10941 5' -59.6 NC_002794.1 + 11875 0.66 0.825682
Target:  5'- cCGCCccGCGaCGgguccucgagCGGGuUCGUGCUCGc -3'
miRNA:   3'- -GCGGu-CGC-GCa---------GCCCuAGCACGAGCc -5'
10941 5' -59.6 NC_002794.1 + 12186 0.66 0.848978
Target:  5'- aCGCCGcCGCGgcCGGGcgCc-GCUCGGa -3'
miRNA:   3'- -GCGGUcGCGCa-GCCCuaGcaCGAGCC- -5'
10941 5' -59.6 NC_002794.1 + 17440 0.67 0.792451
Target:  5'- cCGCCGGCGC-UCGGGcccgcgaccgagGUCGaagGUUCGc -3'
miRNA:   3'- -GCGGUCGCGcAGCCC------------UAGCa--CGAGCc -5'
10941 5' -59.6 NC_002794.1 + 20029 0.66 0.848978
Target:  5'- cCGagAGCGCgGUCcGGAUCGcGCUCGa -3'
miRNA:   3'- -GCggUCGCG-CAGcCCUAGCaCGAGCc -5'
10941 5' -59.6 NC_002794.1 + 34834 0.69 0.66309
Target:  5'- uCGCCGGCGcCGgagCGGGcGUCGgagcggGCgccgCGGg -3'
miRNA:   3'- -GCGGUCGC-GCa--GCCC-UAGCa-----CGa---GCC- -5'
10941 5' -59.6 NC_002794.1 + 49103 0.67 0.783802
Target:  5'- gCGCCGGCGC-UCGGcGUCcUGCacCGGg -3'
miRNA:   3'- -GCGGUCGCGcAGCCcUAGcACGa-GCC- -5'
10941 5' -59.6 NC_002794.1 + 50600 0.68 0.720279
Target:  5'- gGCCGGCGcCGggGGGAUCGagacgagcUGCUUGc -3'
miRNA:   3'- gCGGUCGC-GCagCCCUAGC--------ACGAGCc -5'
10941 5' -59.6 NC_002794.1 + 52764 0.68 0.729619
Target:  5'- gCGCCgcGGCcCGggccgCGGGAUCGUgacGCUCGa -3'
miRNA:   3'- -GCGG--UCGcGCa----GCCCUAGCA---CGAGCc -5'
10941 5' -59.6 NC_002794.1 + 53314 0.68 0.748065
Target:  5'- gGCCGGCGcCG-CGaGAUCG-GCUCGa -3'
miRNA:   3'- gCGGUCGC-GCaGCcCUAGCaCGAGCc -5'
10941 5' -59.6 NC_002794.1 + 58328 0.67 0.817593
Target:  5'- aCGCCGcGCGUgcucGUCGGGAaccUGccGCUCGGc -3'
miRNA:   3'- -GCGGU-CGCG----CAGCCCUa--GCa-CGAGCC- -5'
10941 5' -59.6 NC_002794.1 + 62348 0.67 0.809354
Target:  5'- gCGCCGGCGCaccUGGucUCGUuggaccGCUCGGa -3'
miRNA:   3'- -GCGGUCGCGca-GCCcuAGCA------CGAGCC- -5'
10941 5' -59.6 NC_002794.1 + 67408 0.69 0.67272
Target:  5'- gCGCCAGCgucggcgccaGCGUCGGcGG-CGUGUcgcgccgcuUCGGg -3'
miRNA:   3'- -GCGGUCG----------CGCAGCC-CUaGCACG---------AGCC- -5'
10941 5' -59.6 NC_002794.1 + 71301 0.7 0.624415
Target:  5'- cCGCCGGCGCGcUCGGGcggCGaGCgcgccaccUCGGc -3'
miRNA:   3'- -GCGGUCGCGC-AGCCCua-GCaCG--------AGCC- -5'
10941 5' -59.6 NC_002794.1 + 83875 0.67 0.809354
Target:  5'- gGUCGGCGCGaCGGcccCGgGCUCGGc -3'
miRNA:   3'- gCGGUCGCGCaGCCcuaGCaCGAGCC- -5'
10941 5' -59.6 NC_002794.1 + 88777 0.66 0.86364
Target:  5'- uCGCCGGUGUaaUC-GGAUCGUGaaCGGg -3'
miRNA:   3'- -GCGGUCGCGc-AGcCCUAGCACgaGCC- -5'
10941 5' -59.6 NC_002794.1 + 92311 0.66 0.848978
Target:  5'- gGCUgGGCGCGggcggCGGGGgcccgggCGggcgGCUCGGc -3'
miRNA:   3'- gCGG-UCGCGCa----GCCCUa------GCa---CGAGCC- -5'
10941 5' -59.6 NC_002794.1 + 94277 0.73 0.456585
Target:  5'- uGCgCGGCGCGgcccgagCGGGGggCG-GCUCGGg -3'
miRNA:   3'- gCG-GUCGCGCa------GCCCUa-GCaCGAGCC- -5'
10941 5' -59.6 NC_002794.1 + 96742 0.7 0.653436
Target:  5'- cCGCCGGCGCGUCucgcaagcggccGGcGGUCGagucGCcCGGg -3'
miRNA:   3'- -GCGGUCGCGCAG------------CC-CUAGCa---CGaGCC- -5'
10941 5' -59.6 NC_002794.1 + 98930 0.68 0.748065
Target:  5'- gGCUgGGCGCGgcCGGGAaggggcuggggcUCGUGCUgGGc -3'
miRNA:   3'- gCGG-UCGCGCa-GCCCU------------AGCACGAgCC- -5'
10941 5' -59.6 NC_002794.1 + 101702 0.68 0.766146
Target:  5'- aGCCGGCGCc-CGaGGA-CGUGUUCGu -3'
miRNA:   3'- gCGGUCGCGcaGC-CCUaGCACGAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.