miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10942 3' -53.3 NC_002794.1 + 190200 0.66 0.986746
Target:  5'- cGCGcUCCagcGCCGCgcGCACCCGCcggGCg -3'
miRNA:   3'- -UGU-AGGc--UGGCGauUGUGGGUGca-UG- -5'
10942 3' -53.3 NC_002794.1 + 71468 0.66 0.986746
Target:  5'- cACGUCCGACa--UGACGCaguCGUACg -3'
miRNA:   3'- -UGUAGGCUGgcgAUUGUGgguGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 137170 0.66 0.986746
Target:  5'- ---cCCGGCCGCUcgcuCGCCCGCcccACa -3'
miRNA:   3'- uguaGGCUGGCGAuu--GUGGGUGca-UG- -5'
10942 3' -53.3 NC_002794.1 + 90676 0.66 0.986746
Target:  5'- ---gCCGGCCGCgUGGCuguucguguGCCCGCGgcaggACg -3'
miRNA:   3'- uguaGGCUGGCG-AUUG---------UGGGUGCa----UG- -5'
10942 3' -53.3 NC_002794.1 + 19891 0.66 0.986746
Target:  5'- ---gCCGACCGCUGccGCgagcacgaccugACCCGCcUGCa -3'
miRNA:   3'- uguaGGCUGGCGAU--UG------------UGGGUGcAUG- -5'
10942 3' -53.3 NC_002794.1 + 59467 0.66 0.985761
Target:  5'- gACAUCCG-CCGCUAccucgaggaguucccGCACuaccugcgCCACG-ACg -3'
miRNA:   3'- -UGUAGGCuGGCGAU---------------UGUG--------GGUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 28727 0.66 0.985074
Target:  5'- cCGUCCGACCGUguccccGAgGCCCGucgcucCGUAg -3'
miRNA:   3'- uGUAGGCUGGCGa-----UUgUGGGU------GCAUg -5'
10942 3' -53.3 NC_002794.1 + 115015 0.66 0.985074
Target:  5'- cGCAcCCG-CCGC--GCGCCCACcgucugcagGUGCg -3'
miRNA:   3'- -UGUaGGCuGGCGauUGUGGGUG---------CAUG- -5'
10942 3' -53.3 NC_002794.1 + 181748 0.66 0.985074
Target:  5'- aGCggCCGGCCagcccGCUGACGCCgAUG-GCg -3'
miRNA:   3'- -UGuaGGCUGG-----CGAUUGUGGgUGCaUG- -5'
10942 3' -53.3 NC_002794.1 + 84980 0.66 0.985074
Target:  5'- ---cCCGGCCGCgaAAC-CCCACGa-- -3'
miRNA:   3'- uguaGGCUGGCGa-UUGuGGGUGCaug -5'
10942 3' -53.3 NC_002794.1 + 118660 0.66 0.985074
Target:  5'- uCGUCCGugGgCGC-GACGCCCGCGg-- -3'
miRNA:   3'- uGUAGGC--UgGCGaUUGUGGGUGCaug -5'
10942 3' -53.3 NC_002794.1 + 21956 0.66 0.983246
Target:  5'- gGCcgUCGGCCGCUcccgcGGCGCCguCGUcuccGCg -3'
miRNA:   3'- -UGuaGGCUGGCGA-----UUGUGGguGCA----UG- -5'
10942 3' -53.3 NC_002794.1 + 183447 0.66 0.983246
Target:  5'- gGCGcCCGccACCGCcGGCGCCCGCccGCc -3'
miRNA:   3'- -UGUaGGC--UGGCGaUUGUGGGUGcaUG- -5'
10942 3' -53.3 NC_002794.1 + 146402 0.66 0.983246
Target:  5'- cCGUCCGAUCGUc--CGCCCGCa--- -3'
miRNA:   3'- uGUAGGCUGGCGauuGUGGGUGcaug -5'
10942 3' -53.3 NC_002794.1 + 60018 0.66 0.983246
Target:  5'- cGCA-CCGACCuGCUcGACGCCgACGc-- -3'
miRNA:   3'- -UGUaGGCUGG-CGA-UUGUGGgUGCaug -5'
10942 3' -53.3 NC_002794.1 + 102542 0.66 0.983246
Target:  5'- --cUCgGGCCGCguggaGACggcgGCCCugGUGCu -3'
miRNA:   3'- uguAGgCUGGCGa----UUG----UGGGugCAUG- -5'
10942 3' -53.3 NC_002794.1 + 19301 0.66 0.981253
Target:  5'- uCGUCgCG-UCGCUGAcCGCCCACGccGCg -3'
miRNA:   3'- uGUAG-GCuGGCGAUU-GUGGGUGCa-UG- -5'
10942 3' -53.3 NC_002794.1 + 144444 0.66 0.979089
Target:  5'- uGCAgCCGugCGC--GCACCUGCGcgACu -3'
miRNA:   3'- -UGUaGGCugGCGauUGUGGGUGCa-UG- -5'
10942 3' -53.3 NC_002794.1 + 195112 0.66 0.979089
Target:  5'- gGCGUCuCGugCGCccGCggcgcgcgcggGCUCGCGUACa -3'
miRNA:   3'- -UGUAG-GCugGCGauUG-----------UGGGUGCAUG- -5'
10942 3' -53.3 NC_002794.1 + 124782 0.66 0.979089
Target:  5'- gACGUCCaACCGCgaccUGACcaaguUCUACGUGCa -3'
miRNA:   3'- -UGUAGGcUGGCG----AUUGu----GGGUGCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.